miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 10979 0.66 0.464281
Target:  5'- cGGCGCgCCGGgaaCGCcgGUCGCgcUCGCa -3'
miRNA:   3'- -UUGUG-GGCCg--GCGuaCGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 47812 0.66 0.464281
Target:  5'- cGCACCagauacaGGCgGCGaGCCGCcGCCcgGCg -3'
miRNA:   3'- uUGUGGg------CCGgCGUaCGGCGaUGG--CG- -5'
23978 3' -60.9 NC_005262.1 + 2662 0.66 0.464281
Target:  5'- cGGCGCCgGGCgGCGUccugGCCGCcGuaGCa -3'
miRNA:   3'- -UUGUGGgCCGgCGUA----CGGCGaUggCG- -5'
23978 3' -60.9 NC_005262.1 + 30896 0.66 0.461395
Target:  5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3'
miRNA:   3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22328 0.66 0.454698
Target:  5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3'
miRNA:   3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 59046 0.66 0.454698
Target:  5'- cGGCGgCCGGCUGguUcGaCUGCUGCgCGCc -3'
miRNA:   3'- -UUGUgGGCCGGCguA-C-GGCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 20647 0.66 0.454698
Target:  5'- -cUugCCGGCCGC-UGCCgGCU-CCu- -3'
miRNA:   3'- uuGugGGCCGGCGuACGG-CGAuGGcg -5'
23978 3' -60.9 NC_005262.1 + 43170 0.66 0.454698
Target:  5'- --uGCCCGGUCagGUcgaugAUGaaGCUGCCGCg -3'
miRNA:   3'- uugUGGGCCGG--CG-----UACggCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 55008 0.66 0.454698
Target:  5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3'
miRNA:   3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 11650 0.66 0.454698
Target:  5'- cGGCGCCgGcGUCGCGcUGCaCGCUgGCCGg -3'
miRNA:   3'- -UUGUGGgC-CGGCGU-ACG-GCGA-UGGCg -5'
23978 3' -60.9 NC_005262.1 + 29488 0.66 0.454698
Target:  5'- aAGCACaUCaGCCGCAUGgCGau-CCGCg -3'
miRNA:   3'- -UUGUG-GGcCGGCGUACgGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 41197 0.66 0.449
Target:  5'- cGCGCCCGGCgaccgcuucgagcacCGUAUGaCUGCcgGCaCGCu -3'
miRNA:   3'- uUGUGGGCCG---------------GCGUAC-GGCGa-UG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 25744 0.66 0.445223
Target:  5'- cGCGCa-GGCCgGCAaGCCGCUcacggcCCGCg -3'
miRNA:   3'- uUGUGggCCGG-CGUaCGGCGAu-----GGCG- -5'
23978 3' -60.9 NC_005262.1 + 22997 0.66 0.445223
Target:  5'- gAACGagCUGGCCGUgcggcaugaAUGCgGCUuCCGCg -3'
miRNA:   3'- -UUGUg-GGCCGGCG---------UACGgCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24439 0.66 0.445223
Target:  5'- gAACGCCUGaGCCGUcacgcccgaucgAUGgCGCUGCacgGCa -3'
miRNA:   3'- -UUGUGGGC-CGGCG------------UACgGCGAUGg--CG- -5'
23978 3' -60.9 NC_005262.1 + 11060 0.66 0.445223
Target:  5'- cGGCGuuCCCGGCgCGCcgaacagcgcgaAUGCCuGCUGCgCGUa -3'
miRNA:   3'- -UUGU--GGGCCG-GCG------------UACGG-CGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 26215 0.66 0.43586
Target:  5'- aGAUugCCGuGCCGUc-GCUGUUGCCGa -3'
miRNA:   3'- -UUGugGGC-CGGCGuaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 35086 0.66 0.43586
Target:  5'- gGACggGCCCGcGCUGC-UGCCcgGCUGCCu- -3'
miRNA:   3'- -UUG--UGGGC-CGGCGuACGG--CGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 46681 0.66 0.43586
Target:  5'- cGACGCCC-GCCG-AUGCagucaGC-GCCGCg -3'
miRNA:   3'- -UUGUGGGcCGGCgUACGg----CGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 32687 0.66 0.43586
Target:  5'- cGCugCCGGCCGCcgGCCu---CCa- -3'
miRNA:   3'- uUGugGGCCGGCGuaCGGcgauGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.