miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 60862 0.66 0.301125
Target:  5'- gGCCGaggcaauGCGCGCGaaagcgcgaugaaguCGGCCGuGCGCaCCg -3'
miRNA:   3'- -CGGCg------CGCGUGC---------------GCCGGC-CGCGaGGg -5'
23982 5' -66.1 NC_005262.1 + 6298 0.66 0.298393
Target:  5'- cGCCGCcuucuuGCGCuCGcCGGCCgccucucgucGGCGC-CCg -3'
miRNA:   3'- -CGGCG------CGCGuGC-GCCGG----------CCGCGaGGg -5'
23982 5' -66.1 NC_005262.1 + 37822 0.66 0.298393
Target:  5'- cGCCGUguacuGCGCGaGCGGCaacaaGGUGUucaucgguggauUCCCu -3'
miRNA:   3'- -CGGCG-----CGCGUgCGCCGg----CCGCG------------AGGG- -5'
23982 5' -66.1 NC_005262.1 + 30084 0.66 0.298393
Target:  5'- cGCCggcaagaaggGCGaCGaCACGcCGGCCGcCGCgaagCCCa -3'
miRNA:   3'- -CGG----------CGC-GC-GUGC-GCCGGCcGCGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 59358 0.66 0.298393
Target:  5'- uCCGCGCG-ACGCGcUCGuuuCGCUCCUg -3'
miRNA:   3'- cGGCGCGCgUGCGCcGGCc--GCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 46442 0.66 0.298393
Target:  5'- cGCCGCGcCGCcCGC-GCCGGa---CCCg -3'
miRNA:   3'- -CGGCGC-GCGuGCGcCGGCCgcgaGGG- -5'
23982 5' -66.1 NC_005262.1 + 56912 0.66 0.298393
Target:  5'- cGUCGUG-GUGCGCGuaCucaGGCGCUCCa -3'
miRNA:   3'- -CGGCGCgCGUGCGCcgG---CCGCGAGGg -5'
23982 5' -66.1 NC_005262.1 + 37332 0.66 0.298393
Target:  5'- uUCGUGCGguuCACGCGGaaGGCGCgugUCg -3'
miRNA:   3'- cGGCGCGC---GUGCGCCggCCGCGa--GGg -5'
23982 5' -66.1 NC_005262.1 + 24823 0.66 0.297713
Target:  5'- gGCCGCaCGCcgaucGCGCGcGCCaGCGCgaucagcUCCUc -3'
miRNA:   3'- -CGGCGcGCG-----UGCGC-CGGcCGCG-------AGGG- -5'
23982 5' -66.1 NC_005262.1 + 27646 0.66 0.297713
Target:  5'- cGCUGCGCG-GCGUccucGCCGGgGCUgagcucgCCCu -3'
miRNA:   3'- -CGGCGCGCgUGCGc---CGGCCgCGA-------GGG- -5'
23982 5' -66.1 NC_005262.1 + 51785 0.66 0.294331
Target:  5'- cGCCGCGCacgaACGCGcucacagugucgaucGCCGGCuGCUUg- -3'
miRNA:   3'- -CGGCGCGcg--UGCGC---------------CGGCCG-CGAGgg -5'
23982 5' -66.1 NC_005262.1 + 12116 0.66 0.291646
Target:  5'- cGCCGcCGUGCGCGCGagcagaucGCCG-CGCUg-- -3'
miRNA:   3'- -CGGC-GCGCGUGCGC--------CGGCcGCGAggg -5'
23982 5' -66.1 NC_005262.1 + 11116 0.66 0.291646
Target:  5'- uGCUGCGCGCggucuuGCGCGacaGCCGccuCGCUCg- -3'
miRNA:   3'- -CGGCGCGCG------UGCGC---CGGCc--GCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 53332 0.66 0.291646
Target:  5'- aCCGCGCGCGcCGCuaccucGCCGaccGCGCgaaCCUg -3'
miRNA:   3'- cGGCGCGCGU-GCGc-----CGGC---CGCGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 10582 0.66 0.291646
Target:  5'- aCCGCGgaGCAgCGCGGCgCGaGCgGCUUCg -3'
miRNA:   3'- cGGCGCg-CGU-GCGCCG-GC-CG-CGAGGg -5'
23982 5' -66.1 NC_005262.1 + 3493 0.66 0.291646
Target:  5'- aUCGCGCcCgACGCGGaUCGGCuuacgguggGUUCCCg -3'
miRNA:   3'- cGGCGCGcG-UGCGCC-GGCCG---------CGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 34205 0.66 0.291646
Target:  5'- uGCCGCcCGCGauCGCGGCUucgGGCGacacgCUCg -3'
miRNA:   3'- -CGGCGcGCGU--GCGCCGG---CCGCga---GGG- -5'
23982 5' -66.1 NC_005262.1 + 41621 0.66 0.291646
Target:  5'- cGCUGUGCGCAUGCgucGGaucagugaCGGUGUggguguggCCCg -3'
miRNA:   3'- -CGGCGCGCGUGCG---CCg-------GCCGCGa-------GGG- -5'
23982 5' -66.1 NC_005262.1 + 55216 0.66 0.285019
Target:  5'- cGCCGuCGCuucguCGCGCaGGCCG-CGCUCa- -3'
miRNA:   3'- -CGGC-GCGc----GUGCG-CCGGCcGCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 51262 0.66 0.285019
Target:  5'- cGCCGCGuCGUcggcugccugcuGCGCGcUCGGCGaCUUCUu -3'
miRNA:   3'- -CGGCGC-GCG------------UGCGCcGGCCGC-GAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.