miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 60479 0.65 0.569398
Target:  5'- -aCGCUGCgCgaucagggcgagaCGCCgGGCCGCGCGGcGCa -3'
miRNA:   3'- cgGCGAUG-Ga------------GCGG-CUGGCGCGCU-UG- -5'
24076 5' -59.6 NC_005262.1 + 45961 0.66 0.563176
Target:  5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3'
miRNA:   3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49439 0.66 0.563176
Target:  5'- aCCGCcGCCa-GUCGACgCGCGCaAGCa -3'
miRNA:   3'- cGGCGaUGGagCGGCUG-GCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 28800 0.66 0.563176
Target:  5'- aCCGUgACCUCG-CGcCCGCGCaucucGAGCu -3'
miRNA:   3'- cGGCGaUGGAGCgGCuGGCGCG-----CUUG- -5'
24076 5' -59.6 NC_005262.1 + 2723 0.66 0.563176
Target:  5'- gGCUGCgcCUUCGUCGACgGCGUa--- -3'
miRNA:   3'- -CGGCGauGGAGCGGCUGgCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 51449 0.66 0.562141
Target:  5'- gGCCGUauuCCUucaaugcUGCCG-CCGCGCGcuGCg -3'
miRNA:   3'- -CGGCGau-GGA-------GCGGCuGGCGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 34828 0.66 0.562141
Target:  5'- uGCCGaucAgCUCcCCGACuuccucgCGCGCGAGCa -3'
miRNA:   3'- -CGGCga-UgGAGcGGCUG-------GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6375 0.66 0.562141
Target:  5'- uGCCGgaGCgUUGUCGGCCGCcuucucgGCGGu- -3'
miRNA:   3'- -CGGCgaUGgAGCGGCUGGCG-------CGCUug -5'
24076 5' -59.6 NC_005262.1 + 6809 0.66 0.560072
Target:  5'- cGUCGCgcuugucguaggcggUCUUGCCGACCacgccCGCGAACu -3'
miRNA:   3'- -CGGCGau-------------GGAGCGGCUGGc----GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 51306 0.66 0.552848
Target:  5'- uGCCGCUcgACCagaugggCGCau-CCGCGCGcGGCa -3'
miRNA:   3'- -CGGCGA--UGGa------GCGgcuGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 21647 0.66 0.552848
Target:  5'- gGCCGCgACCggGCCcggcGCCGCGUaGACc -3'
miRNA:   3'- -CGGCGaUGGagCGGc---UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 52823 0.66 0.552848
Target:  5'- cGgCGUUcCCggcgCGCCGAacaGCGCGAAUg -3'
miRNA:   3'- -CgGCGAuGGa---GCGGCUgg-CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 23647 0.66 0.552848
Target:  5'- cGCCGC-ACCcUGuCCGgguuGCaGCGCGAGCg -3'
miRNA:   3'- -CGGCGaUGGaGC-GGC----UGgCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 14255 0.66 0.552848
Target:  5'- -aCGCaGCgUCGCCGgagacggaagugGCaaaGCGCGAACu -3'
miRNA:   3'- cgGCGaUGgAGCGGC------------UGg--CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 45258 0.66 0.552848
Target:  5'- aCCgGCaACCUcggagCGUCGAacgcgaacuuCCGCGCGAACg -3'
miRNA:   3'- cGG-CGaUGGA-----GCGGCU----------GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16052 0.66 0.552848
Target:  5'- cGCCGCUACCgCGacuugCGGCCGaCGauccugaugaCGAACc -3'
miRNA:   3'- -CGGCGAUGGaGCg----GCUGGC-GC----------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 28724 0.66 0.551819
Target:  5'- cGCCGCgagGCCgcgCGCCcggacgccgugauGACCGUGaaGAAUg -3'
miRNA:   3'- -CGGCGa--UGGa--GCGG-------------CUGGCGCg-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 38820 0.66 0.546679
Target:  5'- uGCCGCcucgACCaaGCCGGCCuguuccugaagcuggGCGCGccGCg -3'
miRNA:   3'- -CGGCGa---UGGagCGGCUGG---------------CGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 36008 0.66 0.542578
Target:  5'- uGCCGCgcgagUGCCgUCGCaucaucguGCCGCGUGGAg -3'
miRNA:   3'- -CGGCG-----AUGG-AGCGgc------UGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 59140 0.66 0.542578
Target:  5'- gGCCGg-GCCgCGUCG-CCGCGCGcAUg -3'
miRNA:   3'- -CGGCgaUGGaGCGGCuGGCGCGCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.