miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 27828 0.66 0.347669
Target:  5'- aAGcGCG-GCCGGUCugacuucaaGGugcuGCCGCGUCGCa -3'
miRNA:   3'- -UC-CGCuUGGCCGG---------CC----CGGCGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 41947 0.66 0.347669
Target:  5'- cGGGCGAAaucCCGcGCCuuguGCCGCGccugUUGCCu -3'
miRNA:   3'- -UCCGCUU---GGC-CGGcc--CGGCGC----AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13480 0.66 0.347669
Target:  5'- cGGCGGGCgcugCGGCCGGcuccucaauCCGCG-CgGCCg -3'
miRNA:   3'- uCCGCUUG----GCCGGCCc--------GGCGCaG-CGG- -5'
24099 3' -64.8 NC_005262.1 + 44131 0.66 0.347669
Target:  5'- cGGCGuucccgcguuCCGGCCGGaCgCGCG-CGCg -3'
miRNA:   3'- uCCGCuu--------GGCCGGCCcG-GCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 61417 0.66 0.347669
Target:  5'- gAGGCGAaggcGgCGGCCGaGGaauuCCaCGUCGCg -3'
miRNA:   3'- -UCCGCU----UgGCCGGC-CC----GGcGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 2543 0.66 0.347669
Target:  5'- --aCGAACUGGCCcaGGCCGCcgguguagGUgCGCCa -3'
miRNA:   3'- uccGCUUGGCCGGc-CCGGCG--------CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 46412 0.66 0.34308
Target:  5'- cGGGCuGGGCCcgcaagguccgcaggGGCCc-GCCGCGcCGCCc -3'
miRNA:   3'- -UCCG-CUUGG---------------CCGGccCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 60191 0.66 0.340045
Target:  5'- uGGGCGGcaACCGGCaaggagccGGCCgGCGagGUCg -3'
miRNA:   3'- -UCCGCU--UGGCCGgc------CCGG-CGCagCGG- -5'
24099 3' -64.8 NC_005262.1 + 60820 0.66 0.340045
Target:  5'- gAGGcCGAuuGCCcgauGCCGGGCaGCGUgagUGCCc -3'
miRNA:   3'- -UCC-GCU--UGGc---CGGCCCGgCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 52830 0.66 0.340045
Target:  5'- cGGCGAGC-GGCUGaaGGCUGCGcucaCGCa -3'
miRNA:   3'- uCCGCUUGgCCGGC--CCGGCGCa---GCGg -5'
24099 3' -64.8 NC_005262.1 + 38045 0.66 0.340045
Target:  5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3'
miRNA:   3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 50839 0.66 0.339289
Target:  5'- cGcCGAGCCGGUCGGcgaugccGUCGCGcaCGCCc -3'
miRNA:   3'- uCcGCUUGGCCGGCC-------CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 51195 0.66 0.339289
Target:  5'- cGGCG-GCCcGCUGGaGCCGCGcgggcgaugcugaUCGCa -3'
miRNA:   3'- uCCGCuUGGcCGGCC-CGGCGC-------------AGCGg -5'
24099 3' -64.8 NC_005262.1 + 42151 0.66 0.332543
Target:  5'- cGGCGccgggcCCGGUCGcGGCCGa-UCGUCu -3'
miRNA:   3'- uCCGCuu----GGCCGGC-CCGGCgcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 1913 0.66 0.332543
Target:  5'- gGGGCGGAg-GGUgCGGGuuGCGUgGCUc -3'
miRNA:   3'- -UCCGCUUggCCG-GCCCggCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 48475 0.66 0.332543
Target:  5'- -cGCGAGCCgcgugGGCaCGGGCgGCGcgacggcaGCCg -3'
miRNA:   3'- ucCGCUUGG-----CCG-GCCCGgCGCag------CGG- -5'
24099 3' -64.8 NC_005262.1 + 10639 0.66 0.325162
Target:  5'- aGGGCGggUU-GCCGaucGCCGCGUCGa- -3'
miRNA:   3'- -UCCGCuuGGcCGGCc--CGGCGCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 32583 0.66 0.324431
Target:  5'- cAGGCGcgcgaucuugccuGACUuGUCGGcgagcgugaucGUCGCGUCGCCg -3'
miRNA:   3'- -UCCGC-------------UUGGcCGGCC-----------CGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13225 0.66 0.323701
Target:  5'- cGGC-AGCgGGCuCGGGCUGCGguugaacgggugCGCg -3'
miRNA:   3'- uCCGcUUGgCCG-GCCCGGCGCa-----------GCGg -5'
24099 3' -64.8 NC_005262.1 + 29646 0.66 0.322973
Target:  5'- cGGCGAcgGCCGG-CGGGUagacguagaagaugCGCGgugCGCg -3'
miRNA:   3'- uCCGCU--UGGCCgGCCCG--------------GCGCa--GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.