miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 54798 0.66 0.911301
Target:  5'- -aCGUCGCGcagAAGaUGCGCgCGGCGuuuaGCc -3'
miRNA:   3'- uaGUAGCGU---UUC-AUGCG-GCCGUug--CG- -5'
24101 3' -51.8 NC_005262.1 + 46453 0.66 0.911301
Target:  5'- gAUCuucUCGCGGAu--CGCCG-CGACGCg -3'
miRNA:   3'- -UAGu--AGCGUUUcauGCGGCcGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 41674 0.66 0.911301
Target:  5'- cGUCAUCGC------CGCCGGCAcCGg -3'
miRNA:   3'- -UAGUAGCGuuucauGCGGCCGUuGCg -5'
24101 3' -51.8 NC_005262.1 + 54172 0.66 0.911301
Target:  5'- --gAUCGUcAAG-GCGCCGGUccuguccgAGCGCg -3'
miRNA:   3'- uagUAGCGuUUCaUGCGGCCG--------UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47916 0.66 0.911301
Target:  5'- uGUUuUUGCAGAcgccGaGCGCCGGCGACa- -3'
miRNA:   3'- -UAGuAGCGUUU----CaUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 43662 0.66 0.911301
Target:  5'- --uGUCGagcuGGUGCGUCGGCAGgGg -3'
miRNA:   3'- uagUAGCguu-UCAUGCGGCCGUUgCg -5'
24101 3' -51.8 NC_005262.1 + 17206 0.66 0.911301
Target:  5'- -gCGUCugcgGCGAGGacgGCGCUGGCGuCGUg -3'
miRNA:   3'- uaGUAG----CGUUUCa--UGCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 2084 0.66 0.911301
Target:  5'- -----aGCAGAGcGCGCCGaGCGaacccgGCGCg -3'
miRNA:   3'- uaguagCGUUUCaUGCGGC-CGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17070 0.66 0.911301
Target:  5'- gAUCcgGUCGUgccGGAuUGCGCCGGCuuguccacuGCGCg -3'
miRNA:   3'- -UAG--UAGCG---UUUcAUGCGGCCGu--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 39396 0.66 0.911301
Target:  5'- cAUCAccuUCGCGGAcGUGCgcgccGCCGGUuuGGCGUc -3'
miRNA:   3'- -UAGU---AGCGUUU-CAUG-----CGGCCG--UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 50830 0.66 0.911301
Target:  5'- gGUCGUCGaCGccGAGccgGUCGGCGAUGCc -3'
miRNA:   3'- -UAGUAGC-GU--UUCaugCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 59243 0.66 0.911301
Target:  5'- ----gCGCGAGaUGCGCCGcGC-GCGCa -3'
miRNA:   3'- uaguaGCGUUUcAUGCGGC-CGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 9752 0.66 0.910643
Target:  5'- cGUCGUCGCcc-GUGCGCUcgauggugcuguaGGCGA-GCa -3'
miRNA:   3'- -UAGUAGCGuuuCAUGCGG-------------CCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 52639 0.66 0.910643
Target:  5'- cGUUGUCGCAGGgccgcccGUGCGaCCGGagccACGCc -3'
miRNA:   3'- -UAGUAGCGUUU-------CAUGC-GGCCgu--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 22307 0.66 0.907308
Target:  5'- --gAUCGguGAcggugugauuGUGCGCCGGCAucugggcugcggucaGCGUa -3'
miRNA:   3'- uagUAGCguUU----------CAUGCGGCCGU---------------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 32425 0.66 0.904589
Target:  5'- -cCAUCGCugccGGUuucauCGCCGGCAugaagaaggcuCGCu -3'
miRNA:   3'- uaGUAGCGuu--UCAu----GCGGCCGUu----------GCG- -5'
24101 3' -51.8 NC_005262.1 + 46747 0.66 0.904589
Target:  5'- gAUCgAUCGCcgccacgccgGucGUACaGgCGGCGACGCg -3'
miRNA:   3'- -UAG-UAGCG----------UuuCAUG-CgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 52690 0.66 0.904589
Target:  5'- cUCga-GCAggAAGgcCGCCGGcCGACGCc -3'
miRNA:   3'- uAGuagCGU--UUCauGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 25536 0.66 0.904589
Target:  5'- -gCGUCGCGAcguccGUGCGC-GGCGGCa- -3'
miRNA:   3'- uaGUAGCGUUu----CAUGCGgCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 45780 0.66 0.904589
Target:  5'- -gCAUCGCGgcGaAgGgCGGCGGCGUg -3'
miRNA:   3'- uaGUAGCGUuuCaUgCgGCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.