miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 30501 0.66 0.332871
Target:  5'- cGGC-UUCgGCGCccGGCGuGCGCGCGAUg -3'
miRNA:   3'- uCCGcGAG-CGCG--UCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 63699 0.66 0.332871
Target:  5'- cGGUGaCaUGCGCAGaa-GCGUGCGGCg -3'
miRNA:   3'- uCCGC-GaGCGCGUCgucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 3163 0.66 0.332871
Target:  5'- cGGUGCUCGcCGCucgcCAGcGUGCGCauGGCg -3'
miRNA:   3'- uCCGCGAGC-GCGuc--GUC-CGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 47309 0.66 0.332871
Target:  5'- -aGCGcCUCGCccagcucguccgGCAGCGGGauaCGUGCGAUu -3'
miRNA:   3'- ucCGC-GAGCG------------CGUCGUCC---GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15661 0.66 0.332871
Target:  5'- aGGGCGaacuucggaUCGaCGCcgAGCucuuGCGCGCGGCg -3'
miRNA:   3'- -UCCGCg--------AGC-GCG--UCGuc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46294 0.66 0.332871
Target:  5'- cAGGCuGCcgaucgacgcgUCGCGC-GC-GGCGCGCG-Cu -3'
miRNA:   3'- -UCCG-CG-----------AGCGCGuCGuCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 56737 0.66 0.332871
Target:  5'- cGGCGUUCGacauggccgcCGC-GCuGGCGUcggGCGACg -3'
miRNA:   3'- uCCGCGAGC----------GCGuCGuCCGCG---CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40724 0.66 0.332871
Target:  5'- cGGCGCUgaCGCccucgaGCA-CGGGCG-GCGGCg -3'
miRNA:   3'- uCCGCGA--GCG------CGUcGUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 62672 0.66 0.332871
Target:  5'- uGGGUuuaGUcCGCccggcgGCGGCAGGggaGCGCGACg -3'
miRNA:   3'- -UCCG---CGaGCG------CGUCGUCCg--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 48470 0.66 0.332871
Target:  5'- cGGauCGCgagcCGCGUGGgcaCGGGCgGCGCGACg -3'
miRNA:   3'- uCC--GCGa---GCGCGUC---GUCCG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 10560 0.66 0.332107
Target:  5'- cGGC-CgCGCGCAGCcgcagcguaccgcGGaGCaGCGCGGCg -3'
miRNA:   3'- uCCGcGaGCGCGUCG-------------UC-CG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 35507 0.66 0.325286
Target:  5'- -cGCGCUUGCGC-GCauAGGCGacagcgccggcCGUGACg -3'
miRNA:   3'- ucCGCGAGCGCGuCG--UCCGC-----------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21535 0.66 0.325286
Target:  5'- uGcCGCUCGuCGCcGCAGuGaGCGCGGCg -3'
miRNA:   3'- uCcGCGAGC-GCGuCGUC-CgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 23386 0.66 0.325286
Target:  5'- cAGGuCGCcgaCGCGCGGCuGaaucCGCGCGAa -3'
miRNA:   3'- -UCC-GCGa--GCGCGUCGuCc---GCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 51277 0.66 0.325286
Target:  5'- gAGGCGaucgcgUCGCGCGGCAucugaaGCGCGGu -3'
miRNA:   3'- -UCCGCg-----AGCGCGUCGUccg---CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 38560 0.66 0.325286
Target:  5'- cGGCGUUgCGCGCGGUucGGGCGgaaG-GGCa -3'
miRNA:   3'- uCCGCGA-GCGCGUCG--UCCGCg--CgCUG- -5'
24101 5' -63.9 NC_005262.1 + 12639 0.66 0.325286
Target:  5'- cGGCaccGUgaagaagaagCGCGC-GC-GGCGCGCGGCg -3'
miRNA:   3'- uCCG---CGa---------GCGCGuCGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 34993 0.66 0.317831
Target:  5'- cAGGCaGC-CGgGCAGCAG-CGCG-GGCc -3'
miRNA:   3'- -UCCG-CGaGCgCGUCGUCcGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 21343 0.66 0.317831
Target:  5'- gAGGCGaUCGagGCGGCcaAGGCcGCGCGcaGCg -3'
miRNA:   3'- -UCCGCgAGCg-CGUCG--UCCG-CGCGC--UG- -5'
24101 5' -63.9 NC_005262.1 + 50871 0.66 0.317831
Target:  5'- cAGGUGC-CGaCGCAaucGCAcGGCGCGCc-- -3'
miRNA:   3'- -UCCGCGaGC-GCGU---CGU-CCGCGCGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.