Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24106 | 3' | -59.5 | NC_005262.1 | + | 17788 | 0.66 | 0.556569 |
Target: 5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3' miRNA: 3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 47566 | 0.66 | 0.556569 |
Target: 5'- gGCGACgUCGCcCGaCGAaGCGAAgcGGCu -3' miRNA: 3'- aUGCUGgAGCGcGC-GCUcCGCUU--CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 26556 | 0.66 | 0.556569 |
Target: 5'- aGCGGCCgacgCGCuGCGCcAGuucGCGcAGGCa -3' miRNA: 3'- aUGCUGGa---GCG-CGCGcUC---CGCuUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 4402 | 0.66 | 0.556569 |
Target: 5'- gUGCGAUgUCGCGCGCcugcuGcGCGAGcgccuggagcucGGCg -3' miRNA: 3'- -AUGCUGgAGCGCGCGcu---C-CGCUU------------CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 49687 | 0.66 | 0.556569 |
Target: 5'- gGCGGCg-CGCGCaaccugaaccGCGAcGGCGugccGGGCg -3' miRNA: 3'- aUGCUGgaGCGCG----------CGCU-CCGCu---UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 45863 | 0.66 | 0.556569 |
Target: 5'- cGCGACCU-GCuCGCcguuGGCGucGGCg -3' miRNA: 3'- aUGCUGGAgCGcGCGcu--CCGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 45627 | 0.66 | 0.556569 |
Target: 5'- uUGgGGCgCUCGCGCGaucAGGCG--GGCa -3' miRNA: 3'- -AUgCUG-GAGCGCGCgc-UCCGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 48125 | 0.66 | 0.556569 |
Target: 5'- gACGAaguUCUCGaaCGUGCGAucgcggaaGGCGAGGGg -3' miRNA: 3'- aUGCU---GGAGC--GCGCGCU--------CCGCUUCCg -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 49758 | 0.66 | 0.546213 |
Target: 5'- gGCGGCgCcCGCGCcCGAGGCuccGGCc -3' miRNA: 3'- aUGCUG-GaGCGCGcGCUCCGcuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 11875 | 0.66 | 0.546213 |
Target: 5'- gGCGACguguaUCGCGCGaaAGGUGGccgcGGCa -3' miRNA: 3'- aUGCUGg----AGCGCGCgcUCCGCUu---CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 40731 | 0.66 | 0.546213 |
Target: 5'- gACGcCCUCGaGCaCG-GGCGgcGGCg -3' miRNA: 3'- aUGCuGGAGCgCGcGCuCCGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 38338 | 0.66 | 0.545181 |
Target: 5'- aGCGgcaucGCCUCGCGCaGCGccucGGGCaGGuugucguAGGCg -3' miRNA: 3'- aUGC-----UGGAGCGCG-CGC----UCCG-CU-------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 34682 | 0.66 | 0.545181 |
Target: 5'- -uCGGCCuUCGUGCGCGugaugucguucucGGGC--AGGCc -3' miRNA: 3'- auGCUGG-AGCGCGCGC-------------UCCGcuUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 48445 | 0.66 | 0.543118 |
Target: 5'- cAUGACCaCGCGCGCGuaugccGcGCGGaucgcgagccgcguGGGCa -3' miRNA: 3'- aUGCUGGaGCGCGCGCu-----C-CGCU--------------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 2832 | 0.66 | 0.53592 |
Target: 5'- -uCGACCUCGUuuGCGCGcuGGCGugcccGCa -3' miRNA: 3'- auGCUGGAGCG--CGCGCu-CCGCuuc--CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 1893 | 0.66 | 0.53592 |
Target: 5'- cAUuGCC-CGUGCcuucgaGCGGGGCGGAGGg -3' miRNA: 3'- aUGcUGGaGCGCG------CGCUCCGCUUCCg -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 44432 | 0.66 | 0.53592 |
Target: 5'- gGCGACCUCGUGuCGCucGGCaugcugcgaGAGuGGUg -3' miRNA: 3'- aUGCUGGAGCGC-GCGcuCCG---------CUU-CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 27932 | 0.66 | 0.53592 |
Target: 5'- gUGCGcGCgUCGCGCGCacaaacaucuGGGCGGucgcGGCg -3' miRNA: 3'- -AUGC-UGgAGCGCGCGc---------UCCGCUu---CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 57549 | 0.66 | 0.53592 |
Target: 5'- gGCGGCaaagacCGUGCGCGcGGCGGGcuucagcaucucGGCg -3' miRNA: 3'- aUGCUGga----GCGCGCGCuCCGCUU------------CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 52529 | 0.66 | 0.534894 |
Target: 5'- -uCGGCCgaggagaUCGCGCugGCGcAGGCGAuggaaacgaucgAGGCc -3' miRNA: 3'- auGCUGG-------AGCGCG--CGC-UCCGCU------------UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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