miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 14207 0.66 0.808427
Target:  5'- cCGCGACGGCGu---GCCguUCGCgCGCa- -3'
miRNA:   3'- -GCGUUGCCGUuaguUGG--AGCG-GUGcc -5'
24112 3' -53.6 NC_005263.2 + 26001 0.66 0.808427
Target:  5'- aGCGugcCGGCGG-CAGCCgucaCGCCugGu -3'
miRNA:   3'- gCGUu--GCCGUUaGUUGGa---GCGGugCc -5'
24112 3' -53.6 NC_005263.2 + 41567 0.66 0.808427
Target:  5'- aGCAAcacCGGCAcaucGUCAGCgUCGCgAUGc -3'
miRNA:   3'- gCGUU---GCCGU----UAGUUGgAGCGgUGCc -5'
24112 3' -53.6 NC_005263.2 + 9715 0.66 0.808427
Target:  5'- cCGCuGCGGCGcgCuugcGCUcguUCGCCACa- -3'
miRNA:   3'- -GCGuUGCCGUuaGu---UGG---AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 18520 0.66 0.808427
Target:  5'- uCGCGAUGgacGCGAUCAaagcgGCUcgCGCCGCGu -3'
miRNA:   3'- -GCGUUGC---CGUUAGU-----UGGa-GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 16381 0.66 0.808427
Target:  5'- gGCGGCGGCcuGAUgAAgCUgGCCggcaucGCGGg -3'
miRNA:   3'- gCGUUGCCG--UUAgUUgGAgCGG------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 38648 0.66 0.807467
Target:  5'- cCGCGuCGcGCAucgacgcCAACCUCGCCaagaucaaggugcGCGGc -3'
miRNA:   3'- -GCGUuGC-CGUua-----GUUGGAGCGG-------------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 45769 0.66 0.802638
Target:  5'- gCGCAACGGCcgcacgGugCUCGCguuccgccaguucaaCGCGGg -3'
miRNA:   3'- -GCGUUGCCGuuag--UugGAGCG---------------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 38776 0.66 0.798742
Target:  5'- gCGCAA-GGCAuugccggCGACUUCGCCAg-- -3'
miRNA:   3'- -GCGUUgCCGUua-----GUUGGAGCGGUgcc -5'
24112 3' -53.6 NC_005263.2 + 36949 0.66 0.798742
Target:  5'- uCGCAGcCGGC---CAGCUagGCUGCGGg -3'
miRNA:   3'- -GCGUU-GCCGuuaGUUGGagCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 25161 0.66 0.798742
Target:  5'- uGgGACGGUcGUCAACaucgUCGUUugGGa -3'
miRNA:   3'- gCgUUGCCGuUAGUUGg---AGCGGugCC- -5'
24112 3' -53.6 NC_005263.2 + 47414 0.66 0.798742
Target:  5'- gGCGGCGGCA--CGAUCgCGCUcaccgagcACGGg -3'
miRNA:   3'- gCGUUGCCGUuaGUUGGaGCGG--------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 19101 0.66 0.798742
Target:  5'- gCGCAACGcacugcCGGUCGGCCgCGCCGagcgcaucgcCGGg -3'
miRNA:   3'- -GCGUUGCc-----GUUAGUUGGaGCGGU----------GCC- -5'
24112 3' -53.6 NC_005263.2 + 11803 0.66 0.798742
Target:  5'- aCGCGcCGGUcGUC-ACUUCGCgCGCGa -3'
miRNA:   3'- -GCGUuGCCGuUAGuUGGAGCG-GUGCc -5'
24112 3' -53.6 NC_005263.2 + 15958 0.66 0.798742
Target:  5'- aCGUAACGGC---CAACC--GCCGCGa -3'
miRNA:   3'- -GCGUUGCCGuuaGUUGGagCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 32151 0.66 0.798742
Target:  5'- uCGCGGCGGU--UCGGCCguuaCGUCGaGGg -3'
miRNA:   3'- -GCGUUGCCGuuAGUUGGa---GCGGUgCC- -5'
24112 3' -53.6 NC_005263.2 + 20485 0.66 0.798742
Target:  5'- gGCcAUGaGUggUCGACCgucgCGCCGCa- -3'
miRNA:   3'- gCGuUGC-CGuuAGUUGGa---GCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 38834 0.66 0.797763
Target:  5'- -cCAACGGCAAgaugaucgcggacUCGAgCggCGUCACGGu -3'
miRNA:   3'- gcGUUGCCGUU-------------AGUUgGa-GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 17805 0.66 0.788878
Target:  5'- gCGC-AUGGCAAggCGGCCgaggaUGCCGCGc -3'
miRNA:   3'- -GCGuUGCCGUUa-GUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 37944 0.66 0.788878
Target:  5'- gGCAGcCGGUGcgCAACCggccgaUGCCGCGc -3'
miRNA:   3'- gCGUU-GCCGUuaGUUGGa-----GCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.