miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 14563 0.66 0.45782
Target:  5'- -aCGGCGGCAUGuUUGCGUUUcagAUCGGc -3'
miRNA:   3'- ccGCCGCCGUGCuAGCGCGAG---UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47761 0.66 0.45782
Target:  5'- aGGCaucuGGCuGGCGCuuGUCGCGCUCuggcagugcgguGCCGu -3'
miRNA:   3'- -CCG----CCG-CCGUGc-UAGCGCGAG------------UGGCu -5'
24112 5' -60.4 NC_005263.2 + 39713 0.66 0.45782
Target:  5'- aGGCGGCGcGCuuccUGGUCggccugccuGCGC-CACUGAc -3'
miRNA:   3'- -CCGCCGC-CGu---GCUAG---------CGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47243 0.66 0.452078
Target:  5'- cGcCGGcCGGCACGAcggguacgcugUcCGCGCUCgguagugacgugcgcGCCGAa -3'
miRNA:   3'- cC-GCC-GCCGUGCU-----------A-GCGCGAG---------------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 15313 0.66 0.448271
Target:  5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3'
miRNA:   3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 26536 0.66 0.448271
Target:  5'- cGGCGGCGaGCACGcg-GCGCUggaacgGCCa- -3'
miRNA:   3'- -CCGCCGC-CGUGCuagCGCGAg-----UGGcu -5'
24112 5' -60.4 NC_005263.2 + 22368 0.66 0.448271
Target:  5'- gGGCGGacagguCGuGCACGG-CGCGCagCGCCa- -3'
miRNA:   3'- -CCGCC------GC-CGUGCUaGCGCGa-GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 20898 0.66 0.448271
Target:  5'- aGCGGCGGUgcaacgACGAUCaaCGC-CGCCa- -3'
miRNA:   3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 42323 0.66 0.448271
Target:  5'- cGGCGcaGCGGCGCGugCGCGaCUaucaACCGu -3'
miRNA:   3'- -CCGC--CGCCGUGCuaGCGC-GAg---UGGCu -5'
24112 5' -60.4 NC_005263.2 + 44568 0.66 0.448271
Target:  5'- cGCGGCacuGCGCuGAUCcCGCUuuaCGCCGAu -3'
miRNA:   3'- cCGCCGc--CGUG-CUAGcGCGA---GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 3769 0.66 0.438833
Target:  5'- gGGCaGCGGCACGGU-GUuCUCccacacGCCGAc -3'
miRNA:   3'- -CCGcCGCCGUGCUAgCGcGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 7789 0.66 0.438833
Target:  5'- aGGCGGUuccucguaGCACGGguaaCGCGUUauaCGCCGAg -3'
miRNA:   3'- -CCGCCGc-------CGUGCUa---GCGCGA---GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44637 0.66 0.438833
Target:  5'- uGCGGCaGCugaucgagcuGCGccucgaugcGUCGCGCgCGCCGAa -3'
miRNA:   3'- cCGCCGcCG----------UGC---------UAGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 30821 0.66 0.437895
Target:  5'- cGGCGGacaGGUAgaccuugUGAcCGgGUUCGCCGAu -3'
miRNA:   3'- -CCGCCg--CCGU-------GCUaGCgCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 28418 0.66 0.42951
Target:  5'- aGGCGcCGGCACGcgCGUGaacgUCGCgGGc -3'
miRNA:   3'- -CCGCcGCCGUGCuaGCGCg---AGUGgCU- -5'
24112 5' -60.4 NC_005263.2 + 19872 0.66 0.42951
Target:  5'- -aCGGCGaGCGCGGcgaGCGCg-GCCGAu -3'
miRNA:   3'- ccGCCGC-CGUGCUag-CGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 1926 0.66 0.42951
Target:  5'- cGCGuCuGCACGAgCGCGCcggCACCGGc -3'
miRNA:   3'- cCGCcGcCGUGCUaGCGCGa--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 10577 0.66 0.428583
Target:  5'- uGGcCGGCGGCccauugcuCGAUCugcauGCGCUuggcaagCGCCGGa -3'
miRNA:   3'- -CC-GCCGCCGu-------GCUAG-----CGCGA-------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 27203 0.66 0.423972
Target:  5'- uGGCGGCGuugaucgucguuGCAcCgccgcucgugagcguGAUCGCGC-CGCCGGc -3'
miRNA:   3'- -CCGCCGC------------CGU-G---------------CUAGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 18704 0.66 0.423972
Target:  5'- cGCGGCaGGCGCGGgcggCaacccuuuccuguaaGCGCgucggCGCCGGg -3'
miRNA:   3'- cCGCCG-CCGUGCUa---G---------------CGCGa----GUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.