miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 34901 0.66 0.6426
Target:  5'- cGCUcACGCCuggcGCGAAUgucgACCugugaugcGCGCGGaGCu -3'
miRNA:   3'- -CGA-UGUGG----CGCUUGa---UGG--------CGCGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 6276 0.66 0.6426
Target:  5'- aGCUugACUGgGAACggGCUGCGCa--- -3'
miRNA:   3'- -CGAugUGGCgCUUGa-UGGCGCGcccg -5'
24115 5' -56.8 NC_005263.2 + 15180 0.66 0.6426
Target:  5'- aGUgauCGaCGCGAGCgcGCCGCGCGacgucGGCa -3'
miRNA:   3'- -CGau-GUgGCGCUUGa-UGGCGCGC-----CCG- -5'
24115 5' -56.8 NC_005263.2 + 28059 0.66 0.6426
Target:  5'- uGCUGaacgacCGCCGCGAuccaUugCGUGCGGu- -3'
miRNA:   3'- -CGAU------GUGGCGCUug--AugGCGCGCCcg -5'
24115 5' -56.8 NC_005263.2 + 45887 0.66 0.6426
Target:  5'- --cACGCCGUGA----UCGCGCagGGGCg -3'
miRNA:   3'- cgaUGUGGCGCUugauGGCGCG--CCCG- -5'
24115 5' -56.8 NC_005263.2 + 16856 0.66 0.6426
Target:  5'- uGCccgGCGCCGC-----GCCGCGCGGa- -3'
miRNA:   3'- -CGa--UGUGGCGcuugaUGGCGCGCCcg -5'
24115 5' -56.8 NC_005263.2 + 1151 0.66 0.63933
Target:  5'- cGUUGCACCGCGuauccgaucgccucGGCUugCuu-CGGGCu -3'
miRNA:   3'- -CGAUGUGGCGC--------------UUGAugGcgcGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 45434 0.66 0.636058
Target:  5'- gGCgcgACACUGCaGGCUGCCGgugucgccgccgauaCGCcGGCa -3'
miRNA:   3'- -CGa--UGUGGCGcUUGAUGGC---------------GCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 29934 0.66 0.636058
Target:  5'- aGC-GCGCCGCagaGAAUUGCCcagagaucggccugcGCagcgGCGGGCa -3'
miRNA:   3'- -CGaUGUGGCG---CUUGAUGG---------------CG----CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 19957 0.66 0.631696
Target:  5'- -aUGCGCuCGCGuGCU-CgGCGCuGGCa -3'
miRNA:   3'- cgAUGUG-GCGCuUGAuGgCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 10843 0.66 0.631696
Target:  5'- uGCUucguUGgUGCGGGCUACgGCGuCGcGGCg -3'
miRNA:   3'- -CGAu---GUgGCGCUUGAUGgCGC-GC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 30809 0.66 0.631696
Target:  5'- cGC-GCGCCGUGGcgACUGCCuCGCGccaGGUc -3'
miRNA:   3'- -CGaUGUGGCGCU--UGAUGGcGCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 18414 0.66 0.630606
Target:  5'- uGCUACGCCGUcuGCUucgucggcgaugaACCGCuCGaGGUg -3'
miRNA:   3'- -CGAUGUGGCGcuUGA-------------UGGCGcGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 7832 0.66 0.629515
Target:  5'- uCUGCgcaACCGCGAACgggcggaagaucACCGCGCcccaGGUg -3'
miRNA:   3'- cGAUG---UGGCGCUUGa-----------UGGCGCGc---CCG- -5'
24115 5' -56.8 NC_005263.2 + 5201 0.66 0.628425
Target:  5'- uGCagGCGCgGCGucGCUACCGuCGCGaauuccggauacucGGCu -3'
miRNA:   3'- -CGa-UGUGgCGCu-UGAUGGC-GCGC--------------CCG- -5'
24115 5' -56.8 NC_005263.2 + 22470 0.66 0.620793
Target:  5'- aGCgACAgCGCGAucaACUACgGCGCGa-- -3'
miRNA:   3'- -CGaUGUgGCGCU---UGAUGgCGCGCccg -5'
24115 5' -56.8 NC_005263.2 + 2005 0.66 0.620793
Target:  5'- cCUAgGCCGCGccaaauCCGCaGCGGcGCa -3'
miRNA:   3'- cGAUgUGGCGCuugau-GGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 17894 0.66 0.614255
Target:  5'- uGCU-UACCGUGAACgg-CGCGCagaucggcgcgccccGGGCu -3'
miRNA:   3'- -CGAuGUGGCGCUUGaugGCGCG---------------CCCG- -5'
24115 5' -56.8 NC_005263.2 + 10261 0.66 0.609899
Target:  5'- cGC-ACGCgguuCGCGAAacGCCGCGUcGGCg -3'
miRNA:   3'- -CGaUGUG----GCGCUUgaUGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 377 0.66 0.609899
Target:  5'- aGCUGCagGCCGacaGAAUUGCCgaGCGCGuagaGCg -3'
miRNA:   3'- -CGAUG--UGGCg--CUUGAUGG--CGCGCc---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.