miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 27887 0.65 0.507752
Target:  5'- gGCCGGC-GGCGCGcagucgGGcaaagcacucgacgGCgGCGCGu -3'
miRNA:   3'- gCGGCCGuUCGCGCua----CU--------------UGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 43733 0.66 0.500609
Target:  5'- uCGCCGaccGCAuGCGCu---GACCGCGCa -3'
miRNA:   3'- -GCGGC---CGUuCGCGcuacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46912 0.66 0.500609
Target:  5'- aCGCCGG-AAGaaCGCGcu--GCCGCGCa -3'
miRNA:   3'- -GCGGCCgUUC--GCGCuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 29788 0.66 0.500609
Target:  5'- cCGUCGGCGucguagauuuccGGCGCGuauugcGAugCaGCGCGc -3'
miRNA:   3'- -GCGGCCGU------------UCGCGCua----CUugG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30367 0.66 0.500609
Target:  5'- uCGUCGuGC-AGCGCuucGggGAugUGCGCGa -3'
miRNA:   3'- -GCGGC-CGuUCGCG---CuaCUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38918 0.66 0.499592
Target:  5'- aGCCGGCGc-CGCGccGAGCucgacguCGCGCa -3'
miRNA:   3'- gCGGCCGUucGCGCuaCUUG-------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 5846 0.66 0.499592
Target:  5'- uGUCGGCcgucGUGCGGUcgaagucGAGCCGCagGCGg -3'
miRNA:   3'- gCGGCCGuu--CGCGCUA-------CUUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 26716 0.66 0.497561
Target:  5'- gGCCGGCcugcggcAGCGCGAagcgcaccaucacgUcGAGuuGCGCa -3'
miRNA:   3'- gCGGCCGu------UCGCGCU--------------A-CUUggCGCGc -5'
24116 3' -59.1 NC_005263.2 + 40020 0.66 0.494522
Target:  5'- uGCUGGCGuuuuugacuGGCGCGuucguaggacugaucAcgGAACuCGCGCGg -3'
miRNA:   3'- gCGGCCGU---------UCGCGC---------------Ua-CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 24678 0.66 0.494522
Target:  5'- uCGCCGaacaucgagcGCAugAGCGCGuUGAucgacgggcaaucgcAUCGCGCGa -3'
miRNA:   3'- -GCGGC----------CGU--UCGCGCuACU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 11464 0.66 0.490483
Target:  5'- aGCCGaGCucGCGCu----GCCGCGCa -3'
miRNA:   3'- gCGGC-CGuuCGCGcuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 2447 0.66 0.490483
Target:  5'- gGCgCGGCAAacacuuGCGCGccGAacgaaGCCGCGUu -3'
miRNA:   3'- gCG-GCCGUU------CGCGCuaCU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 22465 0.66 0.490483
Target:  5'- --aCGGCAgcgacAGCGCGAUcAACUacgGCGCGa -3'
miRNA:   3'- gcgGCCGU-----UCGCGCUAcUUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 34001 0.66 0.489475
Target:  5'- gGCCGuguuggcugcgucGCGGcGCGCGAUccaGAGCUGCuGCGg -3'
miRNA:   3'- gCGGC-------------CGUU-CGCGCUA---CUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 15478 0.66 0.480453
Target:  5'- uGCCGuGCugcggcGGCGCGGUGAGCaucaGCa -3'
miRNA:   3'- gCGGC-CGu-----UCGCGCUACUUGgcg-CGc -5'
24116 3' -59.1 NC_005263.2 + 32669 0.66 0.480453
Target:  5'- gCGCgGGUcGGCgGCGAUGucgaCGUGCGu -3'
miRNA:   3'- -GCGgCCGuUCG-CGCUACuug-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 46660 0.66 0.480453
Target:  5'- gCGCC-GCGAGCGCcgcGAAgccUCGCGCGc -3'
miRNA:   3'- -GCGGcCGUUCGCGcuaCUU---GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30428 0.66 0.480453
Target:  5'- gGUCGGUgcggucGAGCGCGAgcAGCgugaGCGCGg -3'
miRNA:   3'- gCGGCCG------UUCGCGCUacUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38609 0.66 0.480453
Target:  5'- aGCCcGCGcaCGCGAUGGauagcGCCGgCGCGa -3'
miRNA:   3'- gCGGcCGUucGCGCUACU-----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 20808 0.66 0.480453
Target:  5'- gCGCCGugguauuucuGCAGGCGCGGcucGGCCucGCGCa -3'
miRNA:   3'- -GCGGC----------CGUUCGCGCUac-UUGG--CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.