miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 26812 0.66 0.51731
Target:  5'- cGCACGU-CGCGUaguuggcgcccaUGA-CCuGCCCGaGCc -3'
miRNA:   3'- -CGUGCAuGCGCG------------ACUaGGcCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 11808 0.66 0.51731
Target:  5'- uCGCGUGuCGCuGCauGUCgUGGCUCGGCg -3'
miRNA:   3'- cGUGCAU-GCG-CGacUAG-GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 36000 0.66 0.51731
Target:  5'- gGCGCGcGCGcCGCUGcgCauGCCaGGCc -3'
miRNA:   3'- -CGUGCaUGC-GCGACuaGgcCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 38723 0.66 0.51731
Target:  5'- aGCugGccgcCGCGCUGAaauUCCcGCagccgCCGGCg -3'
miRNA:   3'- -CGugCau--GCGCGACU---AGGcCG-----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18878 0.66 0.513216
Target:  5'- gGCGCGccgcUGCGCGCcGAcggcaaauacgcgCCGGCCUGcGUc -3'
miRNA:   3'- -CGUGC----AUGCGCGaCUa------------GGCCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 34339 0.66 0.507101
Target:  5'- gGCACGaaaGagaaaGCcGAcacaUCCGGCCUGGCc -3'
miRNA:   3'- -CGUGCaugCg----CGaCU----AGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 22407 0.66 0.507101
Target:  5'- -aACGUACGCGCcgccgUGcucgCCGuGUCCGGg -3'
miRNA:   3'- cgUGCAUGCGCG-----ACua--GGC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 10748 0.66 0.507101
Target:  5'- uCGCGcACGCGC--AUgCGGCCguCGGCa -3'
miRNA:   3'- cGUGCaUGCGCGacUAgGCCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 9168 0.66 0.507101
Target:  5'- uGCACGaagccgAUGCGCgacgUCGaGCUCGGCg -3'
miRNA:   3'- -CGUGCa-----UGCGCGacuaGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 42916 0.66 0.507101
Target:  5'- cGCGaGUGCGCgagcaagaaucGCUacccggacgaGAUCaCGGCCCGuGCg -3'
miRNA:   3'- -CGUgCAUGCG-----------CGA----------CUAG-GCCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 45692 0.66 0.506085
Target:  5'- gGCACGcUGC-CGCUGua-CGGCgaccaagcgaccgCCGGCg -3'
miRNA:   3'- -CGUGC-AUGcGCGACuagGCCG-------------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 23085 0.66 0.500006
Target:  5'- gGCGCuGUugGCGUcguucgaucagugggUcGAUCCGGCaaaguucUCGGCg -3'
miRNA:   3'- -CGUG-CAugCGCG---------------A-CUAGGCCG-------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 40803 0.66 0.496979
Target:  5'- aGCGCau-CGCGCaGAcCUGGCCgcaGGCa -3'
miRNA:   3'- -CGUGcauGCGCGaCUaGGCCGGg--CCG- -5'
24118 5' -59.2 NC_005263.2 + 14442 0.66 0.496979
Target:  5'- -gGCGUGCGCGCgcgccucuUUCGaGCCgagCGGCg -3'
miRNA:   3'- cgUGCAUGCGCGacu-----AGGC-CGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 16833 0.66 0.496979
Target:  5'- cUACGUGCGacaGCacuucGA-CCuGCCCGGCg -3'
miRNA:   3'- cGUGCAUGCg--CGa----CUaGGcCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30775 0.66 0.496979
Target:  5'- cGCACGacuuccuCGCGCaUGcgCUGcuGCUCGGCg -3'
miRNA:   3'- -CGUGCau-----GCGCG-ACuaGGC--CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 41195 0.66 0.496979
Target:  5'- cGCGCuGUGCGUcCUGAUUgGGacgagacugCCGGCa -3'
miRNA:   3'- -CGUG-CAUGCGcGACUAGgCCg--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17498 0.66 0.496979
Target:  5'- cGCGCGcgGCGCGUcGAUCgaucaGGCggCGGCu -3'
miRNA:   3'- -CGUGCa-UGCGCGaCUAGg----CCGg-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 37551 0.66 0.486949
Target:  5'- aGCACGU-CGCGCaGAcggCCGacaaCCCGcGCa -3'
miRNA:   3'- -CGUGCAuGCGCGaCUa--GGCc---GGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 401 0.66 0.486949
Target:  5'- aGCGCGUAgaGCGCacGAUCCuugaucaagacaGGCUgcgCGGCa -3'
miRNA:   3'- -CGUGCAUg-CGCGa-CUAGG------------CCGG---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.