miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 29525 0.66 0.293057
Target:  5'- uCGGcGCGCCAGCa-GUGGCcgggAC-GCCa -3'
miRNA:   3'- -GCCaCGCGGUCGgcCGCCGa---UGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 19164 0.66 0.293057
Target:  5'- -cGUGCauccGCCGGC--GCGGCUcguCGGCCg -3'
miRNA:   3'- gcCACG----CGGUCGgcCGCCGAu--GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 13623 0.66 0.293057
Target:  5'- gGGUGCGCgCGGCCGaacGCcugaucauGGaugACGGUCg -3'
miRNA:   3'- gCCACGCG-GUCGGC---CG--------CCga-UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 27944 0.66 0.293057
Target:  5'- aGGUGCagUAGCCGuagaagugccCGGCgcgACGGCCg -3'
miRNA:   3'- gCCACGcgGUCGGCc---------GCCGa--UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 29049 0.66 0.293057
Target:  5'- ---cGCGCaGGCCGcGCGGCgcguccucgggGCGGCg -3'
miRNA:   3'- gccaCGCGgUCGGC-CGCCGa----------UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 14960 0.66 0.293057
Target:  5'- aGGcgccGCGCCauGGCUGGCGGCaGCGaUCu -3'
miRNA:   3'- gCCa---CGCGG--UCGGCCGCCGaUGCcGG- -5'
24169 5' -64.2 NC_005263.2 + 38569 0.66 0.292362
Target:  5'- ---aGCGCCGcGUCGGUcGCUgccgcgcACGGCCg -3'
miRNA:   3'- gccaCGCGGU-CGGCCGcCGA-------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 34690 0.66 0.286156
Target:  5'- cCGGgaucaagGCGCCGGCCG-UGGUcugcaaaccaUugGGCg -3'
miRNA:   3'- -GCCa------CGCGGUCGGCcGCCG----------AugCCGg -5'
24169 5' -64.2 NC_005263.2 + 31402 0.66 0.286156
Target:  5'- aGGUGCGCugCAGCUGcuGCaGCaugUGCGGCa -3'
miRNA:   3'- gCCACGCG--GUCGGC--CGcCG---AUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 25984 0.66 0.286156
Target:  5'- cCGGcgaucgcgcuUGCaGCguGCCGGCGGCaGCcGUCa -3'
miRNA:   3'- -GCC----------ACG-CGguCGGCCGCCGaUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 24598 0.66 0.286156
Target:  5'- uCGG-GCGCaGGCggUGGCGGCgcaGGUCa -3'
miRNA:   3'- -GCCaCGCGgUCG--GCCGCCGaugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 45653 0.66 0.286156
Target:  5'- aGGUGCuuGCCgAGCUGGCcGcGUUGC-GCCa -3'
miRNA:   3'- gCCACG--CGG-UCGGCCG-C-CGAUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 44758 0.66 0.286156
Target:  5'- uGGUcgcucgaccgcGCGCgGcGCCGGCGGCgcgcagacgUugaacaccgcGCGGCCg -3'
miRNA:   3'- gCCA-----------CGCGgU-CGGCCGCCG---------A----------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 15680 0.66 0.286156
Target:  5'- uGGcGUGCCaagagcGGCCGGCGaGCUcgcagcgacuACGGgCg -3'
miRNA:   3'- gCCaCGCGG------UCGGCCGC-CGA----------UGCCgG- -5'
24169 5' -64.2 NC_005263.2 + 30054 0.66 0.285473
Target:  5'- uGGUGCGUCaggauggcuucguAGCCGGCGaGUUugucgAUGGUg -3'
miRNA:   3'- gCCACGCGG-------------UCGGCCGC-CGA-----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 45453 0.66 0.283431
Target:  5'- cCGGUGuCGCCGccgauacGCCGGCaagcgcgaugaaccGcGCgguCGGCCu -3'
miRNA:   3'- -GCCAC-GCGGU-------CGGCCG--------------C-CGau-GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 47304 0.66 0.279383
Target:  5'- uCGGUccuGCGCCggcGGCCGGCacGCUcaaGGUCg -3'
miRNA:   3'- -GCCA---CGCGG---UCGGCCGc-CGAug-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 17250 0.66 0.272739
Target:  5'- gCGGUGUuCCAGCCGcGuCGGaacauCGGCg -3'
miRNA:   3'- -GCCACGcGGUCGGC-C-GCCgau--GCCGg -5'
24169 5' -64.2 NC_005263.2 + 15245 0.66 0.272739
Target:  5'- uGGUGCuGuCCGGCUacaugcuGCGGCUugucGCGGCg -3'
miRNA:   3'- gCCACG-C-GGUCGGc------CGCCGA----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 29755 0.66 0.272739
Target:  5'- aGGUGCGCCGGguUCuGCGGgUucagcaGCGuGCCg -3'
miRNA:   3'- gCCACGCGGUC--GGcCGCCgA------UGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.