miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 5' -57.2 NC_005263.2 + 28987 0.66 0.61424
Target:  5'- cCCGGCgaugCGCu----CGGCGCGGc- -3'
miRNA:   3'- -GGCCGaaa-GCGuagcuGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 30697 0.66 0.61424
Target:  5'- gCCGGCUucgcUUUGCAguaGCGGCaGUGGUc -3'
miRNA:   3'- -GGCCGA----AAGCGUagcUGCCG-CGCCAc -5'
24178 5' -57.2 NC_005263.2 + 29056 0.66 0.61424
Target:  5'- gCCGcGCgg-CGCGUCcucggGGCGGCGCGc-- -3'
miRNA:   3'- -GGC-CGaaaGCGUAG-----CUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 30225 0.66 0.61424
Target:  5'- gCCGGUcgacugaucgUUCGCggCGaaGCGuGCGCGGUa -3'
miRNA:   3'- -GGCCGa---------AAGCGuaGC--UGC-CGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 7689 0.66 0.603417
Target:  5'- aCCGGg-UUCGaGUCGGCcGCGCGGc- -3'
miRNA:   3'- -GGCCgaAAGCgUAGCUGcCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 19872 0.66 0.592618
Target:  5'- aCGGCga--GCG-CGGCGaGCGCGGc- -3'
miRNA:   3'- gGCCGaaagCGUaGCUGC-CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 24545 0.66 0.592618
Target:  5'- gCGGCgg-CGCGggCGGCGGCGgcugcgccaCGGUc -3'
miRNA:   3'- gGCCGaaaGCGUa-GCUGCCGC---------GCCAc -5'
24178 5' -57.2 NC_005263.2 + 37565 0.66 0.590462
Target:  5'- aCGGCcgacaacccgCGCAaggaauaugUCGGCGGCuCGGUGc -3'
miRNA:   3'- gGCCGaaa-------GCGU---------AGCUGCCGcGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 41357 0.66 0.581851
Target:  5'- cCCGGCg--CGCgAUgGACGugacGCGCGaGUGu -3'
miRNA:   3'- -GGCCGaaaGCG-UAgCUGC----CGCGC-CAC- -5'
24178 5' -57.2 NC_005263.2 + 34371 0.66 0.580777
Target:  5'- aCCGGCag-UGCccCGGuacccguCGGCGUGGUGa -3'
miRNA:   3'- -GGCCGaaaGCGuaGCU-------GCCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 2030 0.66 0.571125
Target:  5'- aCGGCcgcaUCGaucaCGUCGACGcccGCGCGGUa -3'
miRNA:   3'- gGCCGaa--AGC----GUAGCUGC---CGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 15696 0.67 0.564712
Target:  5'- gCCGGCgagcUCGCAgcgacuacgggcgguUCGACcaGCGCGGc- -3'
miRNA:   3'- -GGCCGaa--AGCGU---------------AGCUGc-CGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 9555 0.67 0.560447
Target:  5'- gCGGCgcUCGCGgcuugccaGGCGGCGCGc-- -3'
miRNA:   3'- gGCCGaaAGCGUag------CUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 44167 0.67 0.560447
Target:  5'- gCUGGCUggCGCGUgCGA-GGCGCuaggccugccGGUGc -3'
miRNA:   3'- -GGCCGAaaGCGUA-GCUgCCGCG----------CCAC- -5'
24178 5' -57.2 NC_005263.2 + 20671 0.67 0.560447
Target:  5'- gCGGCcgUCGaaagcguguUCGGCGGCGCGa-- -3'
miRNA:   3'- gGCCGaaAGCgu-------AGCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 32666 0.67 0.560447
Target:  5'- aUGGCg--CGgGUCGGCGGCGauGUc -3'
miRNA:   3'- gGCCGaaaGCgUAGCUGCCGCgcCAc -5'
24178 5' -57.2 NC_005263.2 + 14159 0.67 0.560447
Target:  5'- uUGGCgacUUCGgGcCGGCGGC-CGGUGu -3'
miRNA:   3'- gGCCGa--AAGCgUaGCUGCCGcGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 33998 0.67 0.560447
Target:  5'- gCCGGCcgugUUggcUGCGUCG-CGGCGCGcGa- -3'
miRNA:   3'- -GGCCGa---AA---GCGUAGCuGCCGCGC-Cac -5'
24178 5' -57.2 NC_005263.2 + 28104 0.67 0.560447
Target:  5'- gCGGCcgaUCGCGUCguuGACGGCaGUGGc- -3'
miRNA:   3'- gGCCGaa-AGCGUAG---CUGCCG-CGCCac -5'
24178 5' -57.2 NC_005263.2 + 29216 0.67 0.549826
Target:  5'- gCCGGCgcguaUUUGcCGUCGGCGcGCaGCGGc- -3'
miRNA:   3'- -GGCCGa----AAGC-GUAGCUGC-CG-CGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.