miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24218 5' -53.6 NC_005263.2 + 40120 0.66 0.792548
Target:  5'- cAUCGGGCcgacucGUGCAgcucUgGGC--GCCGCGUg -3'
miRNA:   3'- -UAGCCCG------CAUGU----AgCUGuuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 10756 0.66 0.792548
Target:  5'- -gCGcauGCGgcCGUCGGCAucaaAGCUGCGCg -3'
miRNA:   3'- uaGCc--CGCauGUAGCUGU----UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 155 0.66 0.792548
Target:  5'- uUCGGuGCGaGCA-CG-CGAuCCGCGCc -3'
miRNA:   3'- uAGCC-CGCaUGUaGCuGUUuGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 21223 0.66 0.792548
Target:  5'- uUCGaGcGCGUcGCAgccgucaccggCGACGAaguaGCCGCGCa -3'
miRNA:   3'- uAGC-C-CGCA-UGUa----------GCUGUU----UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 37462 0.66 0.792548
Target:  5'- -gCGcGGCGUccauguguacuGCGgcgUGACGAACgGCGCc -3'
miRNA:   3'- uaGC-CCGCA-----------UGUa--GCUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 17059 0.66 0.792548
Target:  5'- -aCGGGCG-ACuguUCGGCAcGGCCGacuGCu -3'
miRNA:   3'- uaGCCCGCaUGu--AGCUGU-UUGGCg--CG- -5'
24218 5' -53.6 NC_005263.2 + 34838 0.66 0.792548
Target:  5'- aGUCGGuGuCGgACAUCGugAAACaguucaGCGUg -3'
miRNA:   3'- -UAGCC-C-GCaUGUAGCugUUUGg-----CGCG- -5'
24218 5' -53.6 NC_005263.2 + 20725 0.66 0.792548
Target:  5'- -cCGGGC---CGUCGGCAacgAAgCGCGCc -3'
miRNA:   3'- uaGCCCGcauGUAGCUGU---UUgGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 21586 0.66 0.792548
Target:  5'- cUCGccGCcgGCGUCGAC--GCCGCGCg -3'
miRNA:   3'- uAGCc-CGcaUGUAGCUGuuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 35549 0.66 0.782505
Target:  5'- -gCGGGCGgGCGcuaCGGCGccgccGGCCGcCGCg -3'
miRNA:   3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5'
24218 5' -53.6 NC_005263.2 + 6712 0.66 0.782505
Target:  5'- gGUCGGGCGcaUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 14244 0.66 0.782505
Target:  5'- -cCGuGGCGUGCGggcuggcuugCGGCG-GCCgGCGCa -3'
miRNA:   3'- uaGC-CCGCAUGUa---------GCUGUuUGG-CGCG- -5'
24218 5' -53.6 NC_005263.2 + 11262 0.66 0.782505
Target:  5'- -cCGGGCGUGCGacccauuccCGGaauGAUCGUGCg -3'
miRNA:   3'- uaGCCCGCAUGUa--------GCUgu-UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 47371 0.66 0.782505
Target:  5'- -aUGGGCG-GCG-CGuuCGAugCGCGCg -3'
miRNA:   3'- uaGCCCGCaUGUaGCu-GUUugGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 20847 0.66 0.782505
Target:  5'- aGUCGGGCcaauucgacgcGaGCGUCG-CAAcggcGCUGCGCc -3'
miRNA:   3'- -UAGCCCG-----------CaUGUAGCuGUU----UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 37739 0.66 0.776401
Target:  5'- -gCGuGGCGgcuCAaugguuugcucgaugUCGGCAAgcuGCCGCGCc -3'
miRNA:   3'- uaGC-CCGCau-GU---------------AGCUGUU---UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 4029 0.66 0.7723
Target:  5'- aGUCGGGCcacCAcUCGAgAAAUUGCGUg -3'
miRNA:   3'- -UAGCCCGcauGU-AGCUgUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 21904 0.66 0.7723
Target:  5'- -aCGGcCGccGCAUCGcGCGGccGCCGCGCg -3'
miRNA:   3'- uaGCCcGCa-UGUAGC-UGUU--UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 45457 0.66 0.771271
Target:  5'- uGUCGccgccgauacgccGGCaaGCG-CGAUGAACCGCGCg -3'
miRNA:   3'- -UAGC-------------CCGcaUGUaGCUGUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 18279 0.66 0.761945
Target:  5'- -cCGGGCGaUGCGcUCGuC-GugCGCGCu -3'
miRNA:   3'- uaGCCCGC-AUGU-AGCuGuUugGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.