miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24233 5' -53.8 NC_005263.2 + 45084 0.65 0.786078
Target:  5'- aCGAUCuGaaguucgcgcgcuaCGUCGCGGCGgaugcgccgGCGAGCg -3'
miRNA:   3'- -GCUAGuC--------------GCAGCGUCGCaag------CGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 28854 0.66 0.779011
Target:  5'- uCGAUCugcgAGuCGUCGCgccagaagccGGCuUUCGUGAGCg -3'
miRNA:   3'- -GCUAG----UC-GCAGCG----------UCGcAAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 18697 0.66 0.779011
Target:  5'- ---cUAGCGgCGCGGCaggCGCGGGCg -3'
miRNA:   3'- gcuaGUCGCaGCGUCGcaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 13656 0.66 0.779011
Target:  5'- aCGGUC-GUG-CGCAccGCG-UCGCGAAUg -3'
miRNA:   3'- -GCUAGuCGCaGCGU--CGCaAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 9220 0.66 0.768782
Target:  5'- uGA-CGGUGcCGuCGGCGUUCagcacgGCGAACg -3'
miRNA:   3'- gCUaGUCGCaGC-GUCGCAAG------CGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 35456 0.66 0.768782
Target:  5'- gCGGU-AGCGUUGaCAGCGggCGcCGAAa -3'
miRNA:   3'- -GCUAgUCGCAGC-GUCGCaaGC-GCUUg -5'
24233 5' -53.8 NC_005263.2 + 17533 0.66 0.768782
Target:  5'- ---aCAGCGcgCGCAGCGg-CGUGAAg -3'
miRNA:   3'- gcuaGUCGCa-GCGUCGCaaGCGCUUg -5'
24233 5' -53.8 NC_005263.2 + 41549 0.66 0.768782
Target:  5'- aCGcgCGGCGcgcCGUGGCGgcgaUGCGAGCu -3'
miRNA:   3'- -GCuaGUCGCa--GCGUCGCaa--GCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 17832 0.66 0.768782
Target:  5'- gCGcgCGGCccgauugCGCAGCGcUUCGCcGACg -3'
miRNA:   3'- -GCuaGUCGca-----GCGUCGC-AAGCGcUUG- -5'
24233 5' -53.8 NC_005263.2 + 1446 0.66 0.758408
Target:  5'- gCGA--GGCuUCGCGGCGcUCGCGGc- -3'
miRNA:   3'- -GCUagUCGcAGCGUCGCaAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 18603 0.66 0.758408
Target:  5'- cCGA-CGGaCGcCGCagcGGCGUUCGCGGc- -3'
miRNA:   3'- -GCUaGUC-GCaGCG---UCGCAAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 20106 0.66 0.755269
Target:  5'- uCGAcCAGCGUCGCcGCGcaggguuacggcaagCGCGAc- -3'
miRNA:   3'- -GCUaGUCGCAGCGuCGCaa-------------GCGCUug -5'
24233 5' -53.8 NC_005263.2 + 43207 0.66 0.747901
Target:  5'- gCGA-CGGCGcgcuaUCGCAGCGcgCGCuacaugguGAGCg -3'
miRNA:   3'- -GCUaGUCGC-----AGCGUCGCaaGCG--------CUUG- -5'
24233 5' -53.8 NC_005263.2 + 36641 0.66 0.747901
Target:  5'- ---aCAGUG-CGCGGCag-CGCGAGCu -3'
miRNA:   3'- gcuaGUCGCaGCGUCGcaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 30212 0.66 0.746843
Target:  5'- uGAUCGGCG-CGCcGCcggucgacugaucGUUCGCGGc- -3'
miRNA:   3'- gCUAGUCGCaGCGuCG-------------CAAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 954 0.66 0.737271
Target:  5'- gCGAgCGGCGaCGUAGCGgcggUCGCcuGCg -3'
miRNA:   3'- -GCUaGUCGCaGCGUCGCa---AGCGcuUG- -5'
24233 5' -53.8 NC_005263.2 + 32098 0.66 0.737271
Target:  5'- gCGG-CGGCGUCGguGCGau--CGAGCg -3'
miRNA:   3'- -GCUaGUCGCAGCguCGCaagcGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 26519 0.66 0.737271
Target:  5'- gCGcgCGGCGUCGacgcCGGCG---GCGAGCa -3'
miRNA:   3'- -GCuaGUCGCAGC----GUCGCaagCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 17767 0.66 0.737271
Target:  5'- uGAUCGGCaaGUCGC-GCGaUUCGCa--- -3'
miRNA:   3'- gCUAGUCG--CAGCGuCGC-AAGCGcuug -5'
24233 5' -53.8 NC_005263.2 + 43359 0.66 0.737271
Target:  5'- uCGAugUCGGUGaaaGCuGGCGUgcUCGCGGGCg -3'
miRNA:   3'- -GCU--AGUCGCag-CG-UCGCA--AGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.