miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24234 3' -62.1 NC_005263.2 + 10401 0.66 0.36254
Target:  5'- --gGCCGGCGagcggGUCCGgCGCG-CGUu -3'
miRNA:   3'- gagCGGCCGCg----UAGGCgGCGCuGCAu -5'
24234 3' -62.1 NC_005263.2 + 31611 0.66 0.36254
Target:  5'- -aUGCCGGuCGCGaCgGCCGCG-CGg- -3'
miRNA:   3'- gaGCGGCC-GCGUaGgCGGCGCuGCau -5'
24234 3' -62.1 NC_005263.2 + 5594 0.66 0.36254
Target:  5'- -cCGUCGG-GCAUCCGCacgGCGAggcCGUGc -3'
miRNA:   3'- gaGCGGCCgCGUAGGCGg--CGCU---GCAU- -5'
24234 3' -62.1 NC_005263.2 + 23571 0.66 0.36254
Target:  5'- -cCGCCcGCGCcgCCGCCGUugcccgauACGUAa -3'
miRNA:   3'- gaGCGGcCGCGuaGGCGGCGc-------UGCAU- -5'
24234 3' -62.1 NC_005263.2 + 22379 0.66 0.354312
Target:  5'- gUCGaUCGGCgGCAUCgggcagGCCGCGaACGUAc -3'
miRNA:   3'- gAGC-GGCCG-CGUAGg-----CGGCGC-UGCAU- -5'
24234 3' -62.1 NC_005263.2 + 45419 0.66 0.354312
Target:  5'- -cUGUCGGcCGCcgCCGgCGCGACa-- -3'
miRNA:   3'- gaGCGGCC-GCGuaGGCgGCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 24089 0.66 0.354312
Target:  5'- -cUGCCGaGCGCGUCgGCacuuugcagCGCGGCGc- -3'
miRNA:   3'- gaGCGGC-CGCGUAGgCG---------GCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 47134 0.66 0.354312
Target:  5'- -gCGCCGuccgacGCGCAggcgaCCGCCGCuACGUc -3'
miRNA:   3'- gaGCGGC------CGCGUa----GGCGGCGcUGCAu -5'
24234 3' -62.1 NC_005263.2 + 3344 0.66 0.354312
Target:  5'- -cCGCCGGCGCcgCgCGCggucgaGCGACc-- -3'
miRNA:   3'- gaGCGGCCGCGuaG-GCGg-----CGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 46977 0.66 0.353496
Target:  5'- -aCGCCGuGCGCAgcacggcgcggacUUCGCgCGCGACu-- -3'
miRNA:   3'- gaGCGGC-CGCGU-------------AGGCG-GCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 710 0.66 0.346217
Target:  5'- -cCGCCGccCGCGagCGCCGUGGCGa- -3'
miRNA:   3'- gaGCGGCc-GCGUagGCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 38918 0.66 0.346217
Target:  5'- --aGCCGGCGCcg-CGCCGagcuCGACGUc -3'
miRNA:   3'- gagCGGCCGCGuagGCGGC----GCUGCAu -5'
24234 3' -62.1 NC_005263.2 + 2160 0.66 0.346217
Target:  5'- -gCGCCuGGCGCugAUCCGgCGCGAg--- -3'
miRNA:   3'- gaGCGG-CCGCG--UAGGCgGCGCUgcau -5'
24234 3' -62.1 NC_005263.2 + 10846 0.66 0.346217
Target:  5'- uUCGuuGGUGCGggcuacggCGUCGCGGCGg- -3'
miRNA:   3'- gAGCggCCGCGUag------GCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 41497 0.66 0.346217
Target:  5'- -gCGCCGaGCGCG-CCGCCGaacGCGa- -3'
miRNA:   3'- gaGCGGC-CGCGUaGGCGGCgc-UGCau -5'
24234 3' -62.1 NC_005263.2 + 16597 0.66 0.345414
Target:  5'- uUCGCCGGgcuCGCGcgcgagcagcagcUCgCGCCGCuGACGg- -3'
miRNA:   3'- gAGCGGCC---GCGU-------------AG-GCGGCG-CUGCau -5'
24234 3' -62.1 NC_005263.2 + 20974 0.66 0.338254
Target:  5'- aUCGCCGacgcggcuGCGCGcCUGCgCGuCGACGUGc -3'
miRNA:   3'- gAGCGGC--------CGCGUaGGCG-GC-GCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 26987 0.66 0.338254
Target:  5'- -gCGCCGaGCaGCAcCCGCUGCGcCGg- -3'
miRNA:   3'- gaGCGGC-CG-CGUaGGCGGCGCuGCau -5'
24234 3' -62.1 NC_005263.2 + 41265 0.66 0.338254
Target:  5'- gUCGCCGGUcguGUcgCCGUCGCuGCGc- -3'
miRNA:   3'- gAGCGGCCG---CGuaGGCGGCGcUGCau -5'
24234 3' -62.1 NC_005263.2 + 30349 0.66 0.338254
Target:  5'- -gUGCCGaGCGCGgccgcgCUGCCGcCGGCGc- -3'
miRNA:   3'- gaGCGGC-CGCGUa-----GGCGGC-GCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.