miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24235 5' -66 NC_005263.2 + 36858 0.66 0.252815
Target:  5'- uCGCaCGCCCGgCggUCGAgaauucGAC-CCGGGCg -3'
miRNA:   3'- -GCG-GCGGGCgG--GGCUa-----CUGcGGCCCG- -5'
24235 5' -66 NC_005263.2 + 44881 0.66 0.252815
Target:  5'- uGCUGCCCGgCgucaUCGGggcgGGCggcgGCCGGGCc -3'
miRNA:   3'- gCGGCGGGCgG----GGCUa---CUG----CGGCCCG- -5'
24235 5' -66 NC_005263.2 + 18881 0.66 0.252815
Target:  5'- gCGCCGCUgCGCgCCGAcGgcaaauacGCGCCGGccuGCg -3'
miRNA:   3'- -GCGGCGG-GCGgGGCUaC--------UGCGGCC---CG- -5'
24235 5' -66 NC_005263.2 + 2859 0.66 0.252815
Target:  5'- gGCCgGCCCGCCCgccaguuguagaCGAucucgcUGACcuguUCGGGCg -3'
miRNA:   3'- gCGG-CGGGCGGG------------GCU------ACUGc---GGCCCG- -5'
24235 5' -66 NC_005263.2 + 32914 0.66 0.252815
Target:  5'- gGCgGCCCGCUgaccggcuuCCGAUcGAUGUCGG-Ca -3'
miRNA:   3'- gCGgCGGGCGG---------GGCUA-CUGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 40196 0.66 0.252815
Target:  5'- gCGUCGUCCaCUCCGAUGcggaaGCaUGGGCg -3'
miRNA:   3'- -GCGGCGGGcGGGGCUACug---CG-GCCCG- -5'
24235 5' -66 NC_005263.2 + 6952 0.66 0.246806
Target:  5'- gGCCGCCCacGCCgCGcgaACGCCGGu- -3'
miRNA:   3'- gCGGCGGG--CGGgGCuacUGCGGCCcg -5'
24235 5' -66 NC_005263.2 + 23395 0.66 0.246806
Target:  5'- uGCCGCCUGCgCCGcccgGcACGuUCGGcGCg -3'
miRNA:   3'- gCGGCGGGCGgGGCua--C-UGC-GGCC-CG- -5'
24235 5' -66 NC_005263.2 + 30708 0.66 0.246806
Target:  5'- -aCCGCCCGCCaggcgCGcgGccGCGCCGG-Ca -3'
miRNA:   3'- gcGGCGGGCGGg----GCuaC--UGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 22524 0.66 0.246806
Target:  5'- uGCgGCCUG-CUCGAUGcCGagaCGGGCc -3'
miRNA:   3'- gCGgCGGGCgGGGCUACuGCg--GCCCG- -5'
24235 5' -66 NC_005263.2 + 30602 0.66 0.243257
Target:  5'- cCGCCGCCUGa-UCGAUcGACGCgccgcgcgcgaucaGGGCg -3'
miRNA:   3'- -GCGGCGGGCggGGCUA-CUGCGg-------------CCCG- -5'
24235 5' -66 NC_005263.2 + 12650 0.66 0.243257
Target:  5'- uCGgCGCCCGCUgucaacgcuaccgcgUCGAUGucaACGCCGG-Ca -3'
miRNA:   3'- -GCgGCGGGCGG---------------GGCUAC---UGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 852 0.66 0.240915
Target:  5'- uGCUGCCCuguGCCauaggcacgCUGAcGACGCCGuuGGCg -3'
miRNA:   3'- gCGGCGGG---CGG---------GGCUaCUGCGGC--CCG- -5'
24235 5' -66 NC_005263.2 + 26648 0.66 0.235142
Target:  5'- aGUgGCgCCGCagCGGUGGCGCuuccggauuCGGGCa -3'
miRNA:   3'- gCGgCG-GGCGggGCUACUGCG---------GCCCG- -5'
24235 5' -66 NC_005263.2 + 20776 0.66 0.235142
Target:  5'- gGCCGCgCCGCUgaUCGucgGcGCGUCGGGUc -3'
miRNA:   3'- gCGGCG-GGCGG--GGCua-C-UGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 19673 0.66 0.235142
Target:  5'- aCGCCGCgCUGCCCgCGAcguucacgcgcgUGccgGCGCCuccggGGGUa -3'
miRNA:   3'- -GCGGCG-GGCGGG-GCU------------AC---UGCGG-----CCCG- -5'
24235 5' -66 NC_005263.2 + 6760 0.66 0.235142
Target:  5'- aGCCGCUgcgauCGUUucgagaucguaaUCGGUGACGCCggcGGGCg -3'
miRNA:   3'- gCGGCGG-----GCGG------------GGCUACUGCGG---CCCG- -5'
24235 5' -66 NC_005263.2 + 12852 0.66 0.235142
Target:  5'- gGCaGCCCGUaUUCGAUGGgGCCGGcGUg -3'
miRNA:   3'- gCGgCGGGCG-GGGCUACUgCGGCC-CG- -5'
24235 5' -66 NC_005263.2 + 42851 0.66 0.231734
Target:  5'- uGCCgGCaCCGCCCgcUGAUGACGgCGccugaucgcgucaauGGCg -3'
miRNA:   3'- gCGG-CG-GGCGGG--GCUACUGCgGC---------------CCG- -5'
24235 5' -66 NC_005263.2 + 23278 0.66 0.229485
Target:  5'- aCGCCGUggaaGCCCUGGggacaGGCGCCGuuuuacGGCg -3'
miRNA:   3'- -GCGGCGgg--CGGGGCUa----CUGCGGC------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.