miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 3' -54.4 NC_005263.2 + 24555 0.66 0.731898
Target:  5'- gGGC-GGcGGCGGCUGCGCCaCGguCGGCa -3'
miRNA:   3'- gUUGaCCaUUGUUGGCGCGG-GC--GUCG- -5'
24262 3' -54.4 NC_005263.2 + 9358 0.66 0.731898
Target:  5'- ----cGGUGAaGGCgaGCGCCgGCGGCu -3'
miRNA:   3'- guugaCCAUUgUUGg-CGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 15387 0.66 0.731898
Target:  5'- ----gGGUAGCGACC-CGgCCGCcguGCa -3'
miRNA:   3'- guugaCCAUUGUUGGcGCgGGCGu--CG- -5'
24262 3' -54.4 NC_005263.2 + 20639 0.66 0.731898
Target:  5'- aGGCcgUGGccGCAgugGCCGCGCCgcucguCGCGGCc -3'
miRNA:   3'- gUUG--ACCauUGU---UGGCGCGG------GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 17062 0.66 0.730821
Target:  5'- aCGGCUucaugaaGGUGcucgagcagcGCAcGCCGCGCCuCGCcGCa -3'
miRNA:   3'- -GUUGA-------CCAU----------UGU-UGGCGCGG-GCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 19751 0.66 0.721085
Target:  5'- -cGCUGGcgcGCuGGCgGCGCUCGUGGCc -3'
miRNA:   3'- guUGACCau-UG-UUGgCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 4719 0.66 0.721085
Target:  5'- gGACUcguccgGGUAcg--UCGCGCCCGCgAGCa -3'
miRNA:   3'- gUUGA------CCAUuguuGGCGCGGGCG-UCG- -5'
24262 3' -54.4 NC_005263.2 + 39347 0.66 0.721085
Target:  5'- gGGCUGG---CAGCCGauuCGCUCgGCGGCg -3'
miRNA:   3'- gUUGACCauuGUUGGC---GCGGG-CGUCG- -5'
24262 3' -54.4 NC_005263.2 + 44123 0.66 0.710181
Target:  5'- -cGCUGcucGGCGGCgCGCGCCCGUuacaacGGCc -3'
miRNA:   3'- guUGACca-UUGUUG-GCGCGGGCG------UCG- -5'
24262 3' -54.4 NC_005263.2 + 38447 0.66 0.710181
Target:  5'- -uGCUcGGcGGCGACauuGCGCUCGaCAGCg -3'
miRNA:   3'- guUGA-CCaUUGUUGg--CGCGGGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 43847 0.66 0.710181
Target:  5'- uCGACcGGgcGCAACaaCGUgCGCGGCa -3'
miRNA:   3'- -GUUGaCCauUGUUGgcGCGgGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 12351 0.66 0.710181
Target:  5'- cCAGCcGcag-UAACCGCGCCCGC-GCc -3'
miRNA:   3'- -GUUGaCcauuGUUGGCGCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 17755 0.66 0.710181
Target:  5'- cCGGC-GGcagcGCGGCCGCGCUCgGCAcGCg -3'
miRNA:   3'- -GUUGaCCau--UGUUGGCGCGGG-CGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 2376 0.66 0.699198
Target:  5'- uCGACgcgGcGUAACccauGACgGCGCCgGCGGUc -3'
miRNA:   3'- -GUUGa--C-CAUUG----UUGgCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 25519 0.66 0.699198
Target:  5'- uGACcGGaga-AGCCGCaCCCGCAGUc -3'
miRNA:   3'- gUUGaCCauugUUGGCGcGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 37397 0.66 0.699198
Target:  5'- uGGCUGcGcGACGugcAUCGCGUCgCGCGGCc -3'
miRNA:   3'- gUUGAC-CaUUGU---UGGCGCGG-GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 35987 0.66 0.699198
Target:  5'- gAGCgcgcGUAAUGGCgCGCGCgCCGCuGCg -3'
miRNA:   3'- gUUGac--CAUUGUUG-GCGCG-GGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 44546 0.66 0.699198
Target:  5'- gAugUGGU--CGGCCgacGCGCUgCGCGGCa -3'
miRNA:   3'- gUugACCAuuGUUGG---CGCGG-GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 46100 0.66 0.699198
Target:  5'- uGACgucgGGUAuCAuCCGCGCCgGCGugacGCu -3'
miRNA:   3'- gUUGa---CCAUuGUuGGCGCGGgCGU----CG- -5'
24262 3' -54.4 NC_005263.2 + 10163 0.66 0.699198
Target:  5'- uCGGCcGGUuGCGcACCGgcUGCCgGCGGCg -3'
miRNA:   3'- -GUUGaCCAuUGU-UGGC--GCGGgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.