miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 3' -57.8 NC_005263.2 + 9561 0.66 0.578537
Target:  5'- ---aGGUCGACaaagaacguguccagGCGCUGCGUGCcGUCc -3'
miRNA:   3'- cuagCUAGCUG---------------CGCGGCGCGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 20973 0.66 0.574235
Target:  5'- cAUCGc-CGACGCgGCUGCGCGCc--- -3'
miRNA:   3'- cUAGCuaGCUGCG-CGGCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 27720 0.66 0.574235
Target:  5'- -cUCGAaUGGCgaguuguacgGUGUCgGCGCGCGAUCa -3'
miRNA:   3'- cuAGCUaGCUG----------CGCGG-CGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 25791 0.66 0.574235
Target:  5'- -cUCGAcgUCGACGC-CCGCGaCGCu--- -3'
miRNA:   3'- cuAGCU--AGCUGCGcGGCGC-GCGcuag -5'
24299 3' -57.8 NC_005263.2 + 24420 0.66 0.574235
Target:  5'- --cCGGUUGACGCaagGCGUGCGGUUa -3'
miRNA:   3'- cuaGCUAGCUGCGcggCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 6238 0.66 0.574235
Target:  5'- --cCGAUCGcuCGCgGCCaG-GCGCGGUCg -3'
miRNA:   3'- cuaGCUAGCu-GCG-CGG-CgCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 19811 0.66 0.571013
Target:  5'- cGGUCGcaCGGCcgGUacugcacaaggugaGUCGCGCGCGAUCg -3'
miRNA:   3'- -CUAGCuaGCUG--CG--------------CGGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 41465 0.66 0.563513
Target:  5'- uGAUCGAgcaggcgcugcUCGACGCgggcgagucgGCCGU-CGUGAUCc -3'
miRNA:   3'- -CUAGCU-----------AGCUGCG----------CGGCGcGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 41772 0.66 0.563513
Target:  5'- cGAggaGAUCGGCGCGggcgacUCGCGCGcCGGa- -3'
miRNA:   3'- -CUag-CUAGCUGCGC------GGCGCGC-GCUag -5'
24299 3' -57.8 NC_005263.2 + 36250 0.66 0.563513
Target:  5'- -uUCGA-CGAaaugaaGCGCC-UGCGCGAUUa -3'
miRNA:   3'- cuAGCUaGCUg-----CGCGGcGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 16859 0.66 0.563513
Target:  5'- --cCGG-CGcCGCGCCGCGCG-GAa- -3'
miRNA:   3'- cuaGCUaGCuGCGCGGCGCGCgCUag -5'
24299 3' -57.8 NC_005263.2 + 9901 0.66 0.563513
Target:  5'- cGUCG-UCGGCGCGCgGCGuCGgGccuUCu -3'
miRNA:   3'- cUAGCuAGCUGCGCGgCGC-GCgCu--AG- -5'
24299 3' -57.8 NC_005263.2 + 29232 0.66 0.562443
Target:  5'- cGUCGGcgcgcagCGGCGCGCCGagGCacgcguuguucacGCGGUCg -3'
miRNA:   3'- cUAGCUa------GCUGCGCGGCg-CG-------------CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 35512 0.66 0.560306
Target:  5'- --gCGGUgacacUGGCGCGCCgacugcgcccggcgGCGCGCGggCg -3'
miRNA:   3'- cuaGCUA-----GCUGCGCGG--------------CGCGCGCuaG- -5'
24299 3' -57.8 NC_005263.2 + 10894 0.66 0.557105
Target:  5'- cGUCGugagCGGCGUaucGCCGCGCugggggaugccgcacGUGAUCg -3'
miRNA:   3'- cUAGCua--GCUGCG---CGGCGCG---------------CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 30583 0.66 0.552845
Target:  5'- --cCGcugCG-CGCGCUGUacaGCGCGAUCa -3'
miRNA:   3'- cuaGCua-GCuGCGCGGCG---CGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 16057 0.66 0.552845
Target:  5'- cAUCGucaaacaCGucCGUGCCGC-CGCGAUCg -3'
miRNA:   3'- cUAGCua-----GCu-GCGCGGCGcGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 21914 0.66 0.552845
Target:  5'- cAUCGcgCGGC-CGCCGCGCGg---- -3'
miRNA:   3'- cUAGCuaGCUGcGCGGCGCGCgcuag -5'
24299 3' -57.8 NC_005263.2 + 13176 0.66 0.552845
Target:  5'- cGAUUGAUCa--GCuCCGCGCGC-AUCg -3'
miRNA:   3'- -CUAGCUAGcugCGcGGCGCGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 20689 0.66 0.552845
Target:  5'- -uUCGG-CGGCGCGaaacCUGCGC-CGGUCg -3'
miRNA:   3'- cuAGCUaGCUGCGC----GGCGCGcGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.