miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 5' -64.7 NC_005263.2 + 12478 0.65 0.286782
Target:  5'- -aCGauacCGGCgGCGCGCauugcggcauccuGcGCGCCGGCu -3'
miRNA:   3'- caGCga--GCUGgCGCGCG-------------C-CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 24406 0.66 0.282726
Target:  5'- aUCGCgcaagCGACCcgguugacgcaagGCGUGCGGUuagaucagcuguacgGCaCGGCg -3'
miRNA:   3'- cAGCGa----GCUGG-------------CGCGCGCCG---------------CG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 6722 0.66 0.282726
Target:  5'- -aUGCUCGAgCGCcacacguacacacucGCGCGucacguccaucgcGCGCCGGg -3'
miRNA:   3'- caGCGAGCUgGCG---------------CGCGC-------------CGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 15356 0.66 0.280047
Target:  5'- gGUCGCaUUGcGCCGCGCaaGCGGCaGCgcguacguugcauUGGCg -3'
miRNA:   3'- -CAGCG-AGC-UGGCGCG--CGCCG-CG-------------GCCG- -5'
24324 5' -64.7 NC_005263.2 + 17024 0.66 0.280047
Target:  5'- aUCGCUCGAgCaGCGCGUcGCgGCCaagacgaucgacgGGCg -3'
miRNA:   3'- cAGCGAGCUgG-CGCGCGcCG-CGG-------------CCG- -5'
24324 5' -64.7 NC_005263.2 + 2429 0.66 0.280047
Target:  5'- -cCGCUCGACgaguuguuucuggCGCaaCGCGGCcaGCuCGGCa -3'
miRNA:   3'- caGCGAGCUG-------------GCGc-GCGCCG--CG-GCCG- -5'
24324 5' -64.7 NC_005263.2 + 10145 0.66 0.274093
Target:  5'- -gCGC-CaGCCG-GCGCGGCaucgGCCGGUu -3'
miRNA:   3'- caGCGaGcUGGCgCGCGCCG----CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 9370 0.66 0.274093
Target:  5'- -gCGCcggCGGCUGCgggaauuucaGCGCGGCgGCCaGCu -3'
miRNA:   3'- caGCGa--GCUGGCG----------CGCGCCG-CGGcCG- -5'
24324 5' -64.7 NC_005263.2 + 27229 0.66 0.274093
Target:  5'- -cCGCUCGugaGCGUgaucGCGcCGCCGGCc -3'
miRNA:   3'- caGCGAGCuggCGCG----CGCcGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 704 0.66 0.274093
Target:  5'- aUCGUgCcGCCGCcCGCGaGCGCCguGGCg -3'
miRNA:   3'- cAGCGaGcUGGCGcGCGC-CGCGG--CCG- -5'
24324 5' -64.7 NC_005263.2 + 45785 0.66 0.274093
Target:  5'- -gUGCUCGcguuCCGCcaguucaacGCGgGcGUGCCGGCc -3'
miRNA:   3'- caGCGAGCu---GGCG---------CGCgC-CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 28108 0.66 0.274093
Target:  5'- -aCGUgUCGAUCGCaaGUGCcGCGCCGGg -3'
miRNA:   3'- caGCG-AGCUGGCG--CGCGcCGCGGCCg -5'
24324 5' -64.7 NC_005263.2 + 28102 0.66 0.274093
Target:  5'- -gCGCggcCGAUCGCGUcguugacggcaGUGGCGCCGucuuGCa -3'
miRNA:   3'- caGCGa--GCUGGCGCG-----------CGCCGCGGC----CG- -5'
24324 5' -64.7 NC_005263.2 + 41051 0.66 0.273438
Target:  5'- -gCGCUCGcACCugccauugGCGCGauGCGCCauccgucGGCg -3'
miRNA:   3'- caGCGAGC-UGG--------CGCGCgcCGCGG-------CCG- -5'
24324 5' -64.7 NC_005263.2 + 27114 0.66 0.273438
Target:  5'- -aCGCcggcacgUCGACgCGCagGCGCGcagccGCGUCGGCg -3'
miRNA:   3'- caGCG-------AGCUG-GCG--CGCGC-----CGCGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 41749 0.66 0.272131
Target:  5'- uUCGggCGGCacgGCGCGaucaacgaggagauCGGCGCgGGCg -3'
miRNA:   3'- cAGCgaGCUGg--CGCGC--------------GCCGCGgCCG- -5'
24324 5' -64.7 NC_005263.2 + 39361 0.66 0.27018
Target:  5'- uUCGCUCGGCgGCgGCGCGcuucuacgacgcacCGCaGGCa -3'
miRNA:   3'- cAGCGAGCUGgCG-CGCGCc-------------GCGgCCG- -5'
24324 5' -64.7 NC_005263.2 + 35736 0.66 0.269533
Target:  5'- aGUCGCgaaugcaagcguaGGCgCGgGCGCGGUuacugcgGCUGGCg -3'
miRNA:   3'- -CAGCGag-----------CUG-GCgCGCGCCG-------CGGCCG- -5'
24324 5' -64.7 NC_005263.2 + 46062 0.66 0.267597
Target:  5'- cGUCGaagaUCGACUGaacgaGCG-GGCGCCGuuauGCg -3'
miRNA:   3'- -CAGCg---AGCUGGCg----CGCgCCGCGGC----CG- -5'
24324 5' -64.7 NC_005263.2 + 12662 0.66 0.267597
Target:  5'- cGUCG-UCGGCCgGCGCGCcGGgGUCGuCg -3'
miRNA:   3'- -CAGCgAGCUGG-CGCGCG-CCgCGGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.