miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 3' -55.2 NC_005263.2 + 15204 0.66 0.66283
Target:  5'- gUCAGCggGCCGcCGACGCcgacgccacgaaacuCGCCgcccgccgGCACa -3'
miRNA:   3'- -AGUCGa-UGGU-GUUGCGu--------------GCGGa-------CGUG- -5'
24326 3' -55.2 NC_005263.2 + 7224 0.66 0.661705
Target:  5'- cCGGCgACCAgaaGGCGCGCGCCUc--- -3'
miRNA:   3'- aGUCGaUGGUg--UUGCGUGCGGAcgug -5'
24326 3' -55.2 NC_005263.2 + 30757 0.66 0.661705
Target:  5'- gCAGUUGCCuuguCGacACGCACGacuuCCUcGCGCa -3'
miRNA:   3'- aGUCGAUGGu---GU--UGCGUGC----GGA-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 21427 0.66 0.661705
Target:  5'- gCGGCUACCuCGAaGU-CGCCUGCcCg -3'
miRNA:   3'- aGUCGAUGGuGUUgCGuGCGGACGuG- -5'
24326 3' -55.2 NC_005263.2 + 35920 0.66 0.661705
Target:  5'- -aGGCgACCAUGGCGaCGCGCgUGC-Cg -3'
miRNA:   3'- agUCGaUGGUGUUGC-GUGCGgACGuG- -5'
24326 3' -55.2 NC_005263.2 + 47364 0.66 0.658331
Target:  5'- aUCAGgUGCUGCAggGCGCAacggcaaucaaccuCGCCacgGCGCu -3'
miRNA:   3'- -AGUCgAUGGUGU--UGCGU--------------GCGGa--CGUG- -5'
24326 3' -55.2 NC_005263.2 + 26889 0.66 0.650447
Target:  5'- aCGGCUGCgACGcgcucgaaACGCAcccacuCGCCcGCGCc -3'
miRNA:   3'- aGUCGAUGgUGU--------UGCGU------GCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 22006 0.66 0.650447
Target:  5'- gCGGCgcgUACCAgGACGCGCucgGCC-GCAUc -3'
miRNA:   3'- aGUCG---AUGGUgUUGCGUG---CGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 37942 0.66 0.647065
Target:  5'- cCGGCaGCCGguGCGCaaccggccgaugccGCGCCggcugGCGCu -3'
miRNA:   3'- aGUCGaUGGUguUGCG--------------UGCGGa----CGUG- -5'
24326 3' -55.2 NC_005263.2 + 34329 0.66 0.639171
Target:  5'- aCAGCaUGCgGCccauuaAGCGaCGCGCCUGuCGCc -3'
miRNA:   3'- aGUCG-AUGgUG------UUGC-GUGCGGAC-GUG- -5'
24326 3' -55.2 NC_005263.2 + 39205 0.66 0.639171
Target:  5'- aCAucCUGCCGCcaguauUGCGCGCgCUGCACc -3'
miRNA:   3'- aGUc-GAUGGUGuu----GCGUGCG-GACGUG- -5'
24326 3' -55.2 NC_005263.2 + 31449 0.66 0.639171
Target:  5'- uUCAcGCcga-ACGACGCgaGCGCCUGCAa -3'
miRNA:   3'- -AGU-CGauggUGUUGCG--UGCGGACGUg -5'
24326 3' -55.2 NC_005263.2 + 46926 0.66 0.639171
Target:  5'- --cGCUGCCGCGcaGCACGag-GCACa -3'
miRNA:   3'- aguCGAUGGUGUugCGUGCggaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 21671 0.66 0.639171
Target:  5'- --cGCUGCUGCAGauuCGCAucgacCGCCUGaCGCg -3'
miRNA:   3'- aguCGAUGGUGUU---GCGU-----GCGGAC-GUG- -5'
24326 3' -55.2 NC_005263.2 + 29404 0.66 0.639171
Target:  5'- -gGGUUGCCGCc---CGCGCCUGcCGCg -3'
miRNA:   3'- agUCGAUGGUGuugcGUGCGGAC-GUG- -5'
24326 3' -55.2 NC_005263.2 + 33789 0.66 0.639171
Target:  5'- aCGGUcacggGCCACGACGauaGCGUCgacgGCAUg -3'
miRNA:   3'- aGUCGa----UGGUGUUGCg--UGCGGa---CGUG- -5'
24326 3' -55.2 NC_005263.2 + 22293 0.66 0.629016
Target:  5'- aCGGC--CCGCAAUGCGgGCCguuugauuuaugccgGCACg -3'
miRNA:   3'- aGUCGauGGUGUUGCGUgCGGa--------------CGUG- -5'
24326 3' -55.2 NC_005263.2 + 15778 0.66 0.627888
Target:  5'- uUCAGCUGCUcgACGACcacuGCGCG-CUGCuCg -3'
miRNA:   3'- -AGUCGAUGG--UGUUG----CGUGCgGACGuG- -5'
24326 3' -55.2 NC_005263.2 + 24491 0.66 0.627888
Target:  5'- cCGGCUcgACCACggUGC-CGCCgaacGuCACg -3'
miRNA:   3'- aGUCGA--UGGUGuuGCGuGCGGa---C-GUG- -5'
24326 3' -55.2 NC_005263.2 + 5957 0.66 0.627888
Target:  5'- cCGGCaacUGgCGCAccucGCGaCACGCCUcGCGCg -3'
miRNA:   3'- aGUCG---AUgGUGU----UGC-GUGCGGA-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.