miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 25217 0.66 0.6426
Target:  5'- cCGGCaCGAAcgcCGUGCCGAUCcCGGc-- -3'
miRNA:   3'- -GCCGcGCUU---GCACGGCUAGcGCUaga -5'
24326 5' -56.7 NC_005263.2 + 21733 0.66 0.6426
Target:  5'- uCGGCauGCGcGCGUGauaaGAUCGCGcgCa -3'
miRNA:   3'- -GCCG--CGCuUGCACgg--CUAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 15771 0.66 0.6426
Target:  5'- uCGGCGUGuucaacaaaguGCGUcGCCcGUCGuCGAUCg -3'
miRNA:   3'- -GCCGCGCu----------UGCA-CGGcUAGC-GCUAGa -5'
24326 5' -56.7 NC_005263.2 + 10155 0.66 0.6426
Target:  5'- aGGCGgGcagcuuGGCGUcGCCGAgagCGCGaAUCg -3'
miRNA:   3'- gCCGCgC------UUGCA-CGGCUa--GCGC-UAGa -5'
24326 5' -56.7 NC_005263.2 + 22103 0.66 0.63933
Target:  5'- aGGCGUGAcgGC-UGCCGccggcacgcugcaagCGCGAUCg -3'
miRNA:   3'- gCCGCGCU--UGcACGGCua-------------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 44896 0.66 0.625154
Target:  5'- uCGGgGCGGGCGgcgGCCGGgccggcucaccggccUCGUGcUCa -3'
miRNA:   3'- -GCCgCGCUUGCa--CGGCU---------------AGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 28088 0.66 0.620793
Target:  5'- gCGGUugauguaaGCGAucgACGUGUCGAUCGCa---- -3'
miRNA:   3'- -GCCG--------CGCU---UGCACGGCUAGCGcuaga -5'
24326 5' -56.7 NC_005263.2 + 25079 0.66 0.620793
Target:  5'- aCGGUGCGGcCGagauaGUCGGUCauaccGCGAUCUg -3'
miRNA:   3'- -GCCGCGCUuGCa----CGGCUAG-----CGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 39307 0.66 0.620793
Target:  5'- aGGCGCauGCGcGCgCGAUCGCaGGUUg -3'
miRNA:   3'- gCCGCGcuUGCaCG-GCUAGCG-CUAGa -5'
24326 5' -56.7 NC_005263.2 + 24942 0.66 0.620793
Target:  5'- uGGCgGCGGACGgcggUGCgCGGUuCGCaGAUCg -3'
miRNA:   3'- gCCG-CGCUUGC----ACG-GCUA-GCG-CUAGa -5'
24326 5' -56.7 NC_005263.2 + 30215 0.66 0.620793
Target:  5'- uCGGCGCGcc---GCCGGUCGacuGAUCg -3'
miRNA:   3'- -GCCGCGCuugcaCGGCUAGCg--CUAGa -5'
24326 5' -56.7 NC_005263.2 + 27619 0.66 0.619703
Target:  5'- gCGGCGCGAcggucgaccacucAUG-GCCGAUCGaCGugacgaacGUCUc -3'
miRNA:   3'- -GCCGCGCU-------------UGCaCGGCUAGC-GC--------UAGA- -5'
24326 5' -56.7 NC_005263.2 + 19096 0.66 0.609899
Target:  5'- gCGGUGCGcAACGcacUGCCGGUCggccgcgccgaGCGcAUCg -3'
miRNA:   3'- -GCCGCGC-UUGC---ACGGCUAG-----------CGC-UAGa -5'
24326 5' -56.7 NC_005263.2 + 28045 0.67 0.588178
Target:  5'- uCGGCuCGAGCGUGUgcugaaCGAccgcCGCGAUCc -3'
miRNA:   3'- -GCCGcGCUUGCACG------GCUa---GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 27145 0.67 0.588178
Target:  5'- cCGGCuuucgugcccGCGAugGUGUCGuugaaCGUGGUCg -3'
miRNA:   3'- -GCCG----------CGCUugCACGGCua---GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 21184 0.67 0.588178
Target:  5'- cCGGaCGCGGACGcGCgCGG-CGCGggCg -3'
miRNA:   3'- -GCC-GCGCUUGCaCG-GCUaGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 19174 0.67 0.588178
Target:  5'- cCGGCGCGGcuCGUcgGCCGcgCGUGGg-- -3'
miRNA:   3'- -GCCGCGCUu-GCA--CGGCuaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 39546 0.67 0.577367
Target:  5'- aGGCGacuGGACGacGCUGGUCGCGGcauUCa -3'
miRNA:   3'- gCCGCg--CUUGCa-CGGCUAGCGCU---AGa -5'
24326 5' -56.7 NC_005263.2 + 18753 0.67 0.577367
Target:  5'- uCGGCGCGAuCGUaGgCGG-CGCGGUg- -3'
miRNA:   3'- -GCCGCGCUuGCA-CgGCUaGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 19678 0.67 0.566601
Target:  5'- cCGGUgaagcucaGCG-AUGUGCUGAaaGCGAUCUg -3'
miRNA:   3'- -GCCG--------CGCuUGCACGGCUagCGCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.