miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 20151 0.65 0.573283
Target:  5'- gGCG-CGCCGCCGGC-GCCcaagaucGCGGc-- -3'
miRNA:   3'- gCGCgGCGGCGGUCGaCGG-------CGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 107660 0.66 0.564708
Target:  5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3'
miRNA:   3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 87510 0.66 0.564708
Target:  5'- aCGCGCUGUUaCCGGCacugGCgCGCGGcAGa -3'
miRNA:   3'- -GCGCGGCGGcGGUCGa---CG-GCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 6288 0.66 0.564708
Target:  5'- aGCGCCGagcucucCCAGCUGCacuugCGCGGcGAGg -3'
miRNA:   3'- gCGCGGCggc----GGUCGACG-----GCGCC-UUC- -5'
24349 3' -64.4 NC_005264.1 + 54943 0.66 0.564708
Target:  5'- aGCGCauacgcaccgCGCCGCUAGCUGCCa------ -3'
miRNA:   3'- gCGCG----------GCGGCGGUCGACGGcgccuuc -5'
24349 3' -64.4 NC_005264.1 + 31120 0.66 0.564708
Target:  5'- aGCGCCacgagCGCCAGCaacGCCGCGcAGGc -3'
miRNA:   3'- gCGCGGcg---GCGGUCGa--CGGCGCcUUC- -5'
24349 3' -64.4 NC_005264.1 + 22142 0.66 0.564708
Target:  5'- gCGCGaCGCgCGCCuuagauuGC-GCCGCGGGc- -3'
miRNA:   3'- -GCGCgGCG-GCGGu------CGaCGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 57996 0.66 0.564708
Target:  5'- gGCgGCCGUgGCuCAGCgGCCccgGCGGAc- -3'
miRNA:   3'- gCG-CGGCGgCG-GUCGaCGG---CGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 64170 0.66 0.564708
Target:  5'- uGUGCaagCGCCGCCAGCacuggGUCGagcaGGAAc -3'
miRNA:   3'- gCGCG---GCGGCGGUCGa----CGGCg---CCUUc -5'
24349 3' -64.4 NC_005264.1 + 3481 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 62742 0.66 0.564708
Target:  5'- cCGCGUCGUCGCUgAGCc-CCGCGGc-- -3'
miRNA:   3'- -GCGCGGCGGCGG-UCGacGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 129899 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 10873 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 122508 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 63003 0.66 0.563757
Target:  5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3'
miRNA:   3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 102128 0.66 0.563757
Target:  5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3'
miRNA:   3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 130887 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 11861 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 151047 0.66 0.55522
Target:  5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3'
miRNA:   3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.