miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 122708 0.66 0.951641
Target:  5'- -cCGUCUcgGCGGCGAgacgaGGAGGA-CGGCg -3'
miRNA:   3'- cuGCAGG--UGCCGUUg----CCUCUUcGUCG- -5'
24349 5' -54.9 NC_005264.1 + 82326 0.66 0.951641
Target:  5'- cGACGUugcgcaCCGCGGCGAuguucucgcucuCGGccuuGGCGGCg -3'
miRNA:   3'- -CUGCA------GGUGCCGUU------------GCCucu-UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 69152 0.66 0.951641
Target:  5'- cGCGcuacugCCACGGUAagcGCGGuGAucauGGCAGUu -3'
miRNA:   3'- cUGCa-----GGUGCCGU---UGCCuCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 62223 0.66 0.951641
Target:  5'- cGCGcUCCGCGGCcgcuuCGGGGucGuCGGUa -3'
miRNA:   3'- cUGC-AGGUGCCGuu---GCCUCuuC-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 3681 0.66 0.951641
Target:  5'- -cCGUCUcgGCGGCGAgacgaGGAGGA-CGGCg -3'
miRNA:   3'- cuGCAGG--UGCCGUUg----CCUCUUcGUCG- -5'
24349 5' -54.9 NC_005264.1 + 126248 0.66 0.951231
Target:  5'- aGGCGuaucuuuauaccaUCCugGGCGuguUGGuccgcGGAGGCGGCc -3'
miRNA:   3'- -CUGC-------------AGGugCCGUu--GCC-----UCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 79410 0.66 0.951231
Target:  5'- uGGCGaggCCGCGGCGgaacccagcguggGCGGugcggggucuccGGggGCAGa -3'
miRNA:   3'- -CUGCa--GGUGCCGU-------------UGCC------------UCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 43400 0.66 0.947441
Target:  5'- gGGCGgCCugGGCAGC-GAGAucgcccgccAGCcGCg -3'
miRNA:   3'- -CUGCaGGugCCGUUGcCUCU---------UCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 104703 0.66 0.947441
Target:  5'- uGACGgagcaCCagACGGCuGCGcGAGGucgcgcAGCAGCg -3'
miRNA:   3'- -CUGCa----GG--UGCCGuUGC-CUCU------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 79224 0.66 0.947441
Target:  5'- uGCGUgCA-GGCGGCGGcGggGguGUc -3'
miRNA:   3'- cUGCAgGUgCCGUUGCCuCuuCguCG- -5'
24349 5' -54.9 NC_005264.1 + 104453 0.66 0.947441
Target:  5'- aAUGgCCACGGCGAU--AGAGGCGGg -3'
miRNA:   3'- cUGCaGGUGCCGUUGccUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 132344 0.66 0.947441
Target:  5'- gGACGgCCGCGcGgAGCaGGAGGAGaggGGCg -3'
miRNA:   3'- -CUGCaGGUGC-CgUUG-CCUCUUCg--UCG- -5'
24349 5' -54.9 NC_005264.1 + 30492 0.66 0.947441
Target:  5'- uGACGUaCA-GGUAGCGaggccauugcGGGAAGCGGCu -3'
miRNA:   3'- -CUGCAgGUgCCGUUGC----------CUCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 13317 0.66 0.947441
Target:  5'- gGACGgCCGCGcGgAGCaGGAGGAGaggGGCg -3'
miRNA:   3'- -CUGCaGGUGC-CgUUG-CCUCUUCg--UCG- -5'
24349 5' -54.9 NC_005264.1 + 113951 0.66 0.944809
Target:  5'- cGCGUgCCGCuuucucggacgugaaGGCAccgGCGaGAGAuggAGCAGCg -3'
miRNA:   3'- cUGCA-GGUG---------------CCGU---UGC-CUCU---UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 65548 0.66 0.943007
Target:  5'- cGCGUCaaauUGGCuGCGcGAGGcAGCGGCc -3'
miRNA:   3'- cUGCAGgu--GCCGuUGC-CUCU-UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 33713 0.66 0.943007
Target:  5'- cGCGUCUGCGcGUAgaaacccugaucAgGGAGGAGCuGCu -3'
miRNA:   3'- cUGCAGGUGC-CGU------------UgCCUCUUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 118816 0.66 0.943007
Target:  5'- uACGcCCaACGGCugGACGcauGAGGCGGCu -3'
miRNA:   3'- cUGCaGG-UGCCG--UUGCcu-CUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 135929 0.66 0.943007
Target:  5'- aACGUUCGauUGGCAcagGCGGccGGggGCgAGCg -3'
miRNA:   3'- cUGCAGGU--GCCGU---UGCC--UCuuCG-UCG- -5'
24349 5' -54.9 NC_005264.1 + 37087 0.66 0.943007
Target:  5'- cGACG-CgGCGGCAGuucCGGGGA--CGGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUU---GCCUCUucGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.