miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 48790 0.66 0.995662
Target:  5'- gGCCgGCGGGGcGAACGaccuCGCGuuUCCCAc -3'
miRNA:   3'- aUGGgCGUUUUuUUUGC----GCGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 112283 0.66 0.995662
Target:  5'- -uCCCGCAc-----GCGCGCG-CCUAg -3'
miRNA:   3'- auGGGCGUuuuuuuUGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 157795 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 127949 0.66 0.995662
Target:  5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3'
miRNA:   3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 124425 0.66 0.995662
Target:  5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3'
miRNA:   3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 38769 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 30357 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 149384 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 140352 0.66 0.994931
Target:  5'- aUGCCCGCAGuGAugcgauaggccGAGCGaaGCG-CCCAa -3'
miRNA:   3'- -AUGGGCGUUuUU-----------UUUGCg-CGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 130537 0.66 0.994931
Target:  5'- gACCUGCGcGAAGcgucgcGGCGCGUGUgCUAc -3'
miRNA:   3'- aUGGGCGUuUUUU------UUGCGCGCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 116367 0.66 0.994931
Target:  5'- aACCCGCGAcuccacaggcAAAGAGCGcCGCGcaaaagCCgCAg -3'
miRNA:   3'- aUGGGCGUU----------UUUUUUGC-GCGCa-----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 135553 0.66 0.994931
Target:  5'- --aCCGCGAugacuuucGAGAAGcCGCGCGUCgCu -3'
miRNA:   3'- augGGCGUU--------UUUUUU-GCGCGCAGgGu -5'
24357 5' -50.6 NC_005264.1 + 29649 0.66 0.994931
Target:  5'- gGCCCGCAGucGGucCGCcGCGUUgCGu -3'
miRNA:   3'- aUGGGCGUUuuUUuuGCG-CGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 104147 0.66 0.994931
Target:  5'- gACCCGaaccgaauAGAAAACGCGUG-CCUc -3'
miRNA:   3'- aUGGGCguu-----UUUUUUGCGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 115815 0.66 0.994931
Target:  5'- --aCCGCG--GGAGGC-CGCGUUCCAc -3'
miRNA:   3'- augGGCGUuuUUUUUGcGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 53254 0.66 0.994104
Target:  5'- -cCCCGCG-----GGCGCGUGUCUg- -3'
miRNA:   3'- auGGGCGUuuuuuUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 77011 0.66 0.994104
Target:  5'- gACCCGguAcu-GAGCGCGCGcUUCUu -3'
miRNA:   3'- aUGGGCguUuuuUUUGCGCGC-AGGGu -5'
24357 5' -50.6 NC_005264.1 + 74061 0.66 0.994104
Target:  5'- gGCCCuCGAAGGGAACGCgGCaUCCgGa -3'
miRNA:   3'- aUGGGcGUUUUUUUUGCG-CGcAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 131939 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 12913 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.