miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 56501 0.66 0.900496
Target:  5'- cAAGCGGCAgucagaaaauaucauCGGCgCGCCGGCG-GCAc -3'
miRNA:   3'- uUUCGCUGU---------------GCUG-GUGGCUGCgCGUc -5'
24364 3' -56.7 NC_005264.1 + 106305 0.66 0.897937
Target:  5'- gAGAGCGACAg---CugCGGCGgGCAGg -3'
miRNA:   3'- -UUUCGCUGUgcugGugGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 114297 0.66 0.897937
Target:  5'- gAAGGCGACGgGGgCGCgcggGACGaCGCGGa -3'
miRNA:   3'- -UUUCGCUGUgCUgGUGg---CUGC-GCGUC- -5'
24364 3' -56.7 NC_005264.1 + 6466 0.66 0.897937
Target:  5'- -cGGCGGCGCGGCgAacgUCGGggUGCGCGGc -3'
miRNA:   3'- uuUCGCUGUGCUGgU---GGCU--GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 131805 0.66 0.897937
Target:  5'- -cAGCcGCACGACCGCUaGGCG-GCAc -3'
miRNA:   3'- uuUCGcUGUGCUGGUGG-CUGCgCGUc -5'
24364 3' -56.7 NC_005264.1 + 20137 0.66 0.897937
Target:  5'- uGGGC--CGCGGCuCACCG-CGCGCAa -3'
miRNA:   3'- uUUCGcuGUGCUG-GUGGCuGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 12779 0.66 0.897937
Target:  5'- -cAGCcGCACGACCGCUaGGCG-GCAc -3'
miRNA:   3'- uuUCGcUGUGCUGGUGG-CUGCgCGUc -5'
24364 3' -56.7 NC_005264.1 + 125493 0.66 0.897937
Target:  5'- -cGGCGGCGCGGCgAacgUCGGggUGCGCGGc -3'
miRNA:   3'- uuUCGCUGUGCUGgU---GGCU--GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 135840 0.66 0.897937
Target:  5'- gAAAGCGAgaAUGGCUACCcGCGUGCc- -3'
miRNA:   3'- -UUUCGCUg-UGCUGGUGGcUGCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 75393 0.66 0.897937
Target:  5'- -uGGUG-CGCG-CCACCGucUGCGCGGc -3'
miRNA:   3'- uuUCGCuGUGCuGGUGGCu-GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 91031 0.66 0.897937
Target:  5'- cGGGCGGCuuCGGCCGCU-AUGCGgAGg -3'
miRNA:   3'- uUUCGCUGu-GCUGGUGGcUGCGCgUC- -5'
24364 3' -56.7 NC_005264.1 + 138636 0.66 0.897937
Target:  5'- --cGCuGGCuuCGGCCACCGGCaccGCGcCAGa -3'
miRNA:   3'- uuuCG-CUGu-GCUGGUGGCUG---CGC-GUC- -5'
24364 3' -56.7 NC_005264.1 + 14354 0.66 0.895341
Target:  5'- --cGCGACcaGCGcgucccauagucuaGCCGCCGAcgaaacgguucguCGCGCAGc -3'
miRNA:   3'- uuuCGCUG--UGC--------------UGGUGGCU-------------GCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 156469 0.66 0.89138
Target:  5'- cGAGCGGCugG-UCGCCGAguucaUGCuGCAGc -3'
miRNA:   3'- uUUCGCUGugCuGGUGGCU-----GCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 129523 0.66 0.89138
Target:  5'- gGAGGCGACGgaACCACUGcGgGCGUGGg -3'
miRNA:   3'- -UUUCGCUGUgcUGGUGGC-UgCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 156586 0.66 0.89138
Target:  5'- -cGGCGGCgACGACCG-CGACGgagGCGGc -3'
miRNA:   3'- uuUCGCUG-UGCUGGUgGCUGCg--CGUC- -5'
24364 3' -56.7 NC_005264.1 + 65510 0.66 0.89138
Target:  5'- cGGAGUGAUcgGCGACCugcuuggcACCGGgGCGCc- -3'
miRNA:   3'- -UUUCGCUG--UGCUGG--------UGGCUgCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 37805 0.66 0.89138
Target:  5'- aGAAGaGGCGCG-CCGCCGACGaguuuGCGa -3'
miRNA:   3'- -UUUCgCUGUGCuGGUGGCUGCg----CGUc -5'
24364 3' -56.7 NC_005264.1 + 162707 0.66 0.89138
Target:  5'- -cGGCGuuaAgGCGGCCGCCGGgGaGCGGg -3'
miRNA:   3'- uuUCGC---UgUGCUGGUGGCUgCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 106306 0.66 0.89138
Target:  5'- --cGcCGGCACcaucaccuguGCCGCCGGCGCGCc- -3'
miRNA:   3'- uuuC-GCUGUGc---------UGGUGGCUGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.