miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 3' -62.1 NC_005264.1 + 136927 0.66 0.653801
Target:  5'- gCAGCCGCuucGUGGCgGacaagaAGGcGCAGC-GCc -3'
miRNA:   3'- -GUCGGUG---CACCGgCg-----UCC-CGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 149430 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 30403 0.66 0.653801
Target:  5'- gCGGUCGCGc-GCCGguGcGGagAGCUGCg -3'
miRNA:   3'- -GUCGGUGCacCGGCguC-CCg-UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 130798 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 11772 0.66 0.64391
Target:  5'- cCGGgCGCcUGGCuCGCacuccGGGGCAGCccgagGCg -3'
miRNA:   3'- -GUCgGUGcACCG-GCG-----UCCCGUCGa----CG- -5'
24367 3' -62.1 NC_005264.1 + 25366 0.66 0.64391
Target:  5'- gAGCgu-GUGGUCGaggAGGGCGGCUaGCa -3'
miRNA:   3'- gUCGgugCACCGGCg--UCCCGUCGA-CG- -5'
24367 3' -62.1 NC_005264.1 + 111400 0.66 0.634009
Target:  5'- -cGCCAacaaGGUCGUggAGGGCGGcCUGCc -3'
miRNA:   3'- guCGGUgca-CCGGCG--UCCCGUC-GACG- -5'
24367 3' -62.1 NC_005264.1 + 102737 0.66 0.634009
Target:  5'- aAGUCGCGgcguugugGGCCGCc-GGCAGUagGCu -3'
miRNA:   3'- gUCGGUGCa-------CCGGCGucCCGUCGa-CG- -5'
24367 3' -62.1 NC_005264.1 + 73597 0.66 0.634009
Target:  5'- aAGUUugGgguggGGCCGCAGGcCuGCUGg -3'
miRNA:   3'- gUCGGugCa----CCGGCGUCCcGuCGACg -5'
24367 3' -62.1 NC_005264.1 + 29920 0.66 0.634009
Target:  5'- cCAGCCucauGCGUuGUccauaaCGCAGGGCAGCcuucGCu -3'
miRNA:   3'- -GUCGG----UGCAcCG------GCGUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 121202 0.66 0.634009
Target:  5'- cCGGCCGCGcuGCCGCAucuGGcCAGCcGCu -3'
miRNA:   3'- -GUCGGUGCacCGGCGUc--CC-GUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 117425 0.66 0.634009
Target:  5'- gGGCUGuCGcGGCgCGCAGGGC-GCcGCc -3'
miRNA:   3'- gUCGGU-GCaCCG-GCGUCCCGuCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 29428 0.66 0.634009
Target:  5'- -uGuCCGCGUaGGCUuuGGGGCcaccaacgGGCUGCg -3'
miRNA:   3'- guC-GGUGCA-CCGGcgUCCCG--------UCGACG- -5'
24367 3' -62.1 NC_005264.1 + 31400 0.66 0.624107
Target:  5'- aAGCacguaGCG-GGCCGCcucGGGGCGGgaGa -3'
miRNA:   3'- gUCGg----UGCaCCGGCG---UCCCGUCgaCg -5'
24367 3' -62.1 NC_005264.1 + 151894 0.66 0.624107
Target:  5'- uCAGCUguAUGUGGCgGaGGGGaCGGCgGCu -3'
miRNA:   3'- -GUCGG--UGCACCGgCgUCCC-GUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 32540 0.66 0.624107
Target:  5'- uCGGCCcuggcuguggAUGUGGCUGCcGcGGUAGCcGCc -3'
miRNA:   3'- -GUCGG----------UGCACCGGCGuC-CCGUCGaCG- -5'
24367 3' -62.1 NC_005264.1 + 150427 0.66 0.624107
Target:  5'- aAGCacguaGCG-GGCCGCcucGGGGCGGgaGa -3'
miRNA:   3'- gUCGg----UGCaCCGGCG---UCCCGUCgaCg -5'
24367 3' -62.1 NC_005264.1 + 3605 0.66 0.624107
Target:  5'- aGGCCgugGUGGaCGguGGGC-GCUGUg -3'
miRNA:   3'- gUCGGug-CACCgGCguCCCGuCGACG- -5'
24367 3' -62.1 NC_005264.1 + 73497 0.66 0.624107
Target:  5'- cCAGUCaacaaccuuguACGUGGUCGaggaagaugaCGGGGCAGUgcggGCa -3'
miRNA:   3'- -GUCGG-----------UGCACCGGC----------GUCCCGUCGa---CG- -5'
24367 3' -62.1 NC_005264.1 + 95440 0.66 0.621137
Target:  5'- aAGCCGuCGUGgaauacgcuaccgcGCCgGCGGGcGCAGCgaGCg -3'
miRNA:   3'- gUCGGU-GCAC--------------CGG-CGUCC-CGUCGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.