miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 5' -58.3 NC_005264.1 + 146674 0.66 0.845596
Target:  5'- -gACCUCCGCgcAGGGCggcauuGCCGCCc -3'
miRNA:   3'- agUGGGGGCGauUUUCGgac---CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 94715 0.66 0.845596
Target:  5'- aCAUCCCCGCcGAGuaugagcgcGCCUuGUCGCUg -3'
miRNA:   3'- aGUGGGGGCGaUUUu--------CGGAcCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 137501 0.66 0.845596
Target:  5'- cUACCCCCaacuc--GUCcGGCCGCCg -3'
miRNA:   3'- aGUGGGGGcgauuuuCGGaCCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 41401 0.66 0.845596
Target:  5'- -gGCCUCCGCUuucuuccuAGGCa-GGCCGgCg -3'
miRNA:   3'- agUGGGGGCGAuu------UUCGgaCCGGCgG- -5'
24368 5' -58.3 NC_005264.1 + 160428 0.66 0.845596
Target:  5'- -gGCCUCCGCUuucuuccuAGGCa-GGCCGgCg -3'
miRNA:   3'- agUGGGGGCGAuu------UUCGgaCCGGCgG- -5'
24368 5' -58.3 NC_005264.1 + 66577 0.66 0.845596
Target:  5'- cCGCCaCCUGCUGGuacAGGCUcucgcugGGCUGCg -3'
miRNA:   3'- aGUGG-GGGCGAUU---UUCGGa------CCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 92027 0.66 0.837614
Target:  5'- -aACgCCCGCgaaagaaaugUGGAGGUCggugGGCCGCg -3'
miRNA:   3'- agUGgGGGCG----------AUUUUCGGa---CCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 81206 0.66 0.837614
Target:  5'- aUCACCaCCGCgaggcauauGAGCaucGGCCGUCc -3'
miRNA:   3'- -AGUGGgGGCGauu------UUCGga-CCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 147515 0.66 0.837614
Target:  5'- cUACCa-CGUUucccGAAGaCUUGGCCGCCa -3'
miRNA:   3'- aGUGGggGCGAu---UUUC-GGACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 42644 0.66 0.837614
Target:  5'- gUACCCCCaucGCgcgccGGCagaCUGGCgGCCg -3'
miRNA:   3'- aGUGGGGG---CGauuu-UCG---GACCGgCGG- -5'
24368 5' -58.3 NC_005264.1 + 127835 0.66 0.837614
Target:  5'- gUUGCCUCCGCggc-GGCC-GGCgGUCu -3'
miRNA:   3'- -AGUGGGGGCGauuuUCGGaCCGgCGG- -5'
24368 5' -58.3 NC_005264.1 + 137746 0.66 0.837614
Target:  5'- gUCugCCCCGCUuguc-CCcGG-CGCCg -3'
miRNA:   3'- -AGugGGGGCGAuuuucGGaCCgGCGG- -5'
24368 5' -58.3 NC_005264.1 + 52704 0.66 0.837614
Target:  5'- uUCGCCgCCCGCccccAAAAGCgC-GGCgGCUc -3'
miRNA:   3'- -AGUGG-GGGCGa---UUUUCG-GaCCGgCGG- -5'
24368 5' -58.3 NC_005264.1 + 135171 0.66 0.837614
Target:  5'- cUCAUCCCUGUUAuuuucuaCgUGcGCCGCCa -3'
miRNA:   3'- -AGUGGGGGCGAUuuuc---GgAC-CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 58412 0.66 0.837614
Target:  5'- uUCGCCCCCcacgguagcGCUGAAgaacaGGUCU--CCGCCu -3'
miRNA:   3'- -AGUGGGGG---------CGAUUU-----UCGGAccGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 3935 0.66 0.837614
Target:  5'- -gGCCgCCGUcaagaagggUAGAGGaacguCCUGGCCGCg -3'
miRNA:   3'- agUGGgGGCG---------AUUUUC-----GGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 122961 0.66 0.837614
Target:  5'- -gGCCgCCGUcaagaagggUAGAGGaacguCCUGGCCGCg -3'
miRNA:   3'- agUGGgGGCG---------AUUUUC-----GGACCGGCGg -5'
24368 5' -58.3 NC_005264.1 + 8375 0.66 0.835184
Target:  5'- cUCGCCaCUgGCguccGAGUCauggugaauaaucgUGGCCGCCg -3'
miRNA:   3'- -AGUGG-GGgCGauu-UUCGG--------------ACCGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 157532 0.66 0.829451
Target:  5'- gUACUCCCGCcAGucGCCcGccccacgggucaGCCGCCg -3'
miRNA:   3'- aGUGGGGGCGaUUuuCGGaC------------CGGCGG- -5'
24368 5' -58.3 NC_005264.1 + 92657 0.66 0.829451
Target:  5'- -gGCCCUCGCgccgcaaagAGGAGuuCCUgaaccuacgcGGCCGCCu -3'
miRNA:   3'- agUGGGGGCGa--------UUUUC--GGA----------CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.