miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 130027 0.66 0.921992
Target:  5'- -cGGCGCCGcaggcuUccgcgaugaugguugCGGCCAGaCCGUCGCUGc -3'
miRNA:   3'- gaUCGUGGC------A---------------GCUGGUU-GGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 2855 0.66 0.921992
Target:  5'- --cGCGCCGUcgcccgcugcggcugCGAUCGACCGgggCGCgGc -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGUUGGCa--GCGgC- -5'
24371 5' -56.7 NC_005264.1 + 121881 0.66 0.921992
Target:  5'- --cGCGCCGUcgcccgcugcggcugCGAUCGACCGgggCGCgGc -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGUUGGCa--GCGgC- -5'
24371 5' -56.7 NC_005264.1 + 39100 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 64295 0.66 0.919806
Target:  5'- -gAGUAUCG-CGGCCcacAGCgCGUUGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCUGG---UUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 131973 0.66 0.919806
Target:  5'- -gAGaCGCCGUUGccuACCGggcggcgcGCCGcCGCCGa -3'
miRNA:   3'- gaUC-GUGGCAGC---UGGU--------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 158127 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 32374 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 151401 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 130445 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 148456 0.66 0.91418
Target:  5'- --cGCugCG-CGACgAACCGuuUCGUCGg -3'
miRNA:   3'- gauCGugGCaGCUGgUUGGC--AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 100583 0.66 0.91418
Target:  5'- -aAGCGCCGUCGuuguaCAGCCuGUgGCgGc -3'
miRNA:   3'- gaUCGUGGCAGCug---GUUGG-CAgCGgC- -5'
24371 5' -56.7 NC_005264.1 + 11418 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 25543 0.66 0.91418
Target:  5'- -gGGUGCCGUaCGcCCG--CGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCA-GCuGGUugGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 68256 0.66 0.91418
Target:  5'- --cGCGCCGcgggCGGCCugcuGCUGcCGCCu -3'
miRNA:   3'- gauCGUGGCa---GCUGGu---UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 88104 0.66 0.91418
Target:  5'- -gGGCACagCGUCGGCCGgcGCgGUUGCg- -3'
miRNA:   3'- gaUCGUG--GCAGCUGGU--UGgCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 125975 0.66 0.913605
Target:  5'- -aGGCAgauaCGUCGACCAccaauacaucuucGUCGUCGCUGu -3'
miRNA:   3'- gaUCGUg---GCAGCUGGU-------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 48005 0.66 0.910695
Target:  5'- --cGCACCGUggauauguuuucccaCGACCAugGCgCGUgGCCa -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGU--UG-GCAgCGGc -5'
24371 5' -56.7 NC_005264.1 + 154821 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 34753 0.66 0.908327
Target:  5'- --cGCGCCgGUCG-CC-GCUGUCGCUa -3'
miRNA:   3'- gauCGUGG-CAGCuGGuUGGCAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.