miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 87747 0.66 0.891512
Target:  5'- cGGCGC-CGGcgccUGCCGCaGCGcCGCGAa -3'
miRNA:   3'- -UCGUGcGCCua--AUGGCG-CGC-GUGCUc -5'
24373 3' -57.2 NC_005264.1 + 58738 0.66 0.891512
Target:  5'- gGGCAucCGCGGcc-GCCGCuGCGCuaucaGAGg -3'
miRNA:   3'- -UCGU--GCGCCuaaUGGCG-CGCGug---CUC- -5'
24373 3' -57.2 NC_005264.1 + 159371 0.66 0.891512
Target:  5'- uGCcacauCGUGGAUgcggcACCGgGCGcCACGGGc -3'
miRNA:   3'- uCGu----GCGCCUAa----UGGCgCGC-GUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 108607 0.66 0.891512
Target:  5'- uGGCGCGCGGG--GCCGCcuCGaCACa-- -3'
miRNA:   3'- -UCGUGCGCCUaaUGGCGc-GC-GUGcuc -5'
24373 3' -57.2 NC_005264.1 + 95440 0.66 0.887507
Target:  5'- aAGCcguCGUGGAauacgcUACCGCGCcggcgggcgcagcgaGCGCGGGc -3'
miRNA:   3'- -UCGu--GCGCCUa-----AUGGCGCG---------------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 155266 0.66 0.884793
Target:  5'- cAGCgGCGCGGGguagGCgGCGgGgACGAu -3'
miRNA:   3'- -UCG-UGCGCCUaa--UGgCGCgCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 66182 0.66 0.884793
Target:  5'- gGGUGCGCuaac-GCCGCGCGCgACGGu -3'
miRNA:   3'- -UCGUGCGccuaaUGGCGCGCG-UGCUc -5'
24373 3' -57.2 NC_005264.1 + 37583 0.66 0.884793
Target:  5'- cGGCAagucuCGCGGcg-GCCGCG-GCGgGGGg -3'
miRNA:   3'- -UCGU-----GCGCCuaaUGGCGCgCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 120303 0.66 0.884793
Target:  5'- aAGaCGCGCGGAa-GCUGCGCcCACGc- -3'
miRNA:   3'- -UC-GUGCGCCUaaUGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 38158 0.66 0.884793
Target:  5'- cAGCAUGCGugcGAcUACCGCcGCGCuguGGGg -3'
miRNA:   3'- -UCGUGCGC---CUaAUGGCG-CGCGug-CUC- -5'
24373 3' -57.2 NC_005264.1 + 157185 0.66 0.884793
Target:  5'- cAGCAUGCGugcGAcUACCGCcGCGCuguGGGg -3'
miRNA:   3'- -UCGUGCGC---CUaAUGGCG-CGCGug-CUC- -5'
24373 3' -57.2 NC_005264.1 + 156610 0.66 0.884793
Target:  5'- cGGCAagucuCGCGGcg-GCCGCG-GCGgGGGg -3'
miRNA:   3'- -UCGU-----GCGCCuaaUGGCGCgCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 120173 0.66 0.884793
Target:  5'- cGCACG-GGAcgauccgGCCGCcagucugccgGCGCGCGAu -3'
miRNA:   3'- uCGUGCgCCUaa-----UGGCG----------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 1146 0.66 0.884793
Target:  5'- cGCACG-GGAcgauccgGCCGCcagucugccgGCGCGCGAu -3'
miRNA:   3'- uCGUGCgCCUaa-----UGGCG----------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 123030 0.66 0.877856
Target:  5'- -cUAgGCGGAUgcgUGCCGCGCaucGCcaACGAGa -3'
miRNA:   3'- ucGUgCGCCUA---AUGGCGCG---CG--UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 47309 0.66 0.877856
Target:  5'- uGGCA-GCGGGgaACUGCcCGCGuCGAGg -3'
miRNA:   3'- -UCGUgCGCCUaaUGGCGcGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 138319 0.66 0.877856
Target:  5'- aGGCAaguUGUGGucaUGgCGCGUGCGCGAc -3'
miRNA:   3'- -UCGU---GCGCCua-AUgGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 87603 0.66 0.877856
Target:  5'- cGGCaaACGCGGAcgaccugGCCGCGC-CA-GAGg -3'
miRNA:   3'- -UCG--UGCGCCUaa-----UGGCGCGcGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 99587 0.66 0.877856
Target:  5'- aAGCGCaGCGGcaUGCUGgGCGCuuCGAu -3'
miRNA:   3'- -UCGUG-CGCCuaAUGGCgCGCGu-GCUc -5'
24373 3' -57.2 NC_005264.1 + 132323 0.66 0.875734
Target:  5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3'
miRNA:   3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.