miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 39018 0.66 0.990447
Target:  5'- aUGGACcagGGCGuucGCCAaCGACCCa -3'
miRNA:   3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 76925 0.66 0.990447
Target:  5'- -cAGACGcGGUcAGAGUCAGCG-CCUg -3'
miRNA:   3'- aaUUUGUaUCGcUCUCGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 82955 0.66 0.990447
Target:  5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3'
miRNA:   3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5'
24375 5' -51.5 NC_005264.1 + 16330 0.66 0.990447
Target:  5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3'
miRNA:   3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 133375 0.66 0.990447
Target:  5'- --cGACucGGCGAGAGUCAucGCGgcggcgcaGCCCg -3'
miRNA:   3'- aauUUGuaUCGCUCUCGGU--CGC--------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 158045 0.66 0.990447
Target:  5'- aUGGACcagGGCGuucGCCAaCGACCCa -3'
miRNA:   3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 135152 0.66 0.990447
Target:  5'- -cGAGCGUcGGCGAGgcagaGGCCAGCcgcguACCUc -3'
miRNA:   3'- aaUUUGUA-UCGCUC-----UCGGUCGc----UGGG- -5'
24375 5' -51.5 NC_005264.1 + 67939 0.66 0.990447
Target:  5'- -----uGUAGCGGGGuucccggcGCCuGCGGCUCg -3'
miRNA:   3'- aauuugUAUCGCUCU--------CGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 51411 0.66 0.990447
Target:  5'- ---uACAUGGCGuacGCCGGgGAgCCg -3'
miRNA:   3'- aauuUGUAUCGCucuCGGUCgCUgGG- -5'
24375 5' -51.5 NC_005264.1 + 115458 0.66 0.990318
Target:  5'- ---cACGUAGCuuuauugacaacuGGGGGCCAGa-GCCCu -3'
miRNA:   3'- aauuUGUAUCG-------------CUCUCGGUCgcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 118246 0.66 0.990318
Target:  5'- -gGAACAaggacccUAGCGcAGAGCUGGCGugguuGCCg -3'
miRNA:   3'- aaUUUGU-------AUCGC-UCUCGGUCGC-----UGGg -5'
24375 5' -51.5 NC_005264.1 + 96252 0.66 0.990318
Target:  5'- ---cGCAgcccAGCGAGAGCCuguaccagcagguGGCGGCg- -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGG-------------UCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 22850 0.66 0.989092
Target:  5'- -cGGACG-GGCGAG-GCCGcGCGaACCUa -3'
miRNA:   3'- aaUUUGUaUCGCUCuCGGU-CGC-UGGG- -5'
24375 5' -51.5 NC_005264.1 + 101027 0.66 0.989092
Target:  5'- -cAGGCAcugcccGGCGAu-GCCcGCGGCCCg -3'
miRNA:   3'- aaUUUGUa-----UCGCUcuCGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 54010 0.66 0.989092
Target:  5'- gUAAuccCAgAGCaAGAGCUcgcugAGCGACCCu -3'
miRNA:   3'- aAUUu--GUaUCGcUCUCGG-----UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120077 0.66 0.989092
Target:  5'- -cGGACGccggcUAGCGGGAGUC-GUG-CCCa -3'
miRNA:   3'- aaUUUGU-----AUCGCUCUCGGuCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 8778 0.66 0.987592
Target:  5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3'
miRNA:   3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5'
24375 5' -51.5 NC_005264.1 + 28379 0.66 0.987592
Target:  5'- aUAAACGUAGCGgcguguauAGAuuCCAGCGGCa- -3'
miRNA:   3'- aAUUUGUAUCGC--------UCUc-GGUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 94527 0.66 0.987592
Target:  5'- ---cACGUGG-GAGGG-CAGCGGCgCCg -3'
miRNA:   3'- aauuUGUAUCgCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 127804 0.66 0.987592
Target:  5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3'
miRNA:   3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.