miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 79885 0.65 0.990668
Target:  5'- -gGCGCGGCGgcgaccgucgcaggcGACGUCGCaauguaaccaagaugGCAG-GCCa -3'
miRNA:   3'- agUGUGCUGU---------------UUGCAGUG---------------CGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 23034 0.66 0.989643
Target:  5'- gUCcCGCGACGgccGACGgCACGCGuucGUGCUu -3'
miRNA:   3'- -AGuGUGCUGU---UUGCaGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 81842 0.66 0.989643
Target:  5'- cCACcaaGGCGGAgGcCACGuCGGCGUCg -3'
miRNA:   3'- aGUGug-CUGUUUgCaGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 29465 0.66 0.989643
Target:  5'- cCACGCGGauugggGGGCGgugcaGCGCAGgGCUa -3'
miRNA:   3'- aGUGUGCUg-----UUUGCag---UGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 127810 0.66 0.989643
Target:  5'- gUCGCGCGAgcCAucucccgacAGCGUUGCcuccGCGGCgGCCg -3'
miRNA:   3'- -AGUGUGCU--GU---------UUGCAGUG----CGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 17281 0.66 0.989643
Target:  5'- gCGCugGGCAAACaugguggccacgGUUAcCGCuAGCGCg -3'
miRNA:   3'- aGUGugCUGUUUG------------CAGU-GCG-UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 51983 0.66 0.989643
Target:  5'- gUCGCuguaGCuauuGCGGACGUCGCGCgcggAGCGaCCc -3'
miRNA:   3'- -AGUG----UGc---UGUUUGCAGUGCG----UCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 136113 0.66 0.989643
Target:  5'- -gACgACGACGAauaacgacGCGgggaGCGCAuGCGCCc -3'
miRNA:   3'- agUG-UGCUGUU--------UGCag--UGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 67628 0.66 0.989643
Target:  5'- cCACGCGggcGCAGGggUGUCcuGCGCGGC-CCg -3'
miRNA:   3'- aGUGUGC---UGUUU--GCAG--UGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 112301 0.66 0.989643
Target:  5'- -aGCuuCGACAGGCcucUugGCAGCGCa -3'
miRNA:   3'- agUGu-GCUGUUUGca-GugCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 38658 0.66 0.989643
Target:  5'- gUCGa--GAUGAugGcCGCgGCGGCGCCc -3'
miRNA:   3'- -AGUgugCUGUUugCaGUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 43884 0.66 0.989643
Target:  5'- -aGCGCGGCAAAgGggGCGCcggagacgauAGCGCg -3'
miRNA:   3'- agUGUGCUGUUUgCagUGCG----------UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 149466 0.66 0.989374
Target:  5'- gUCGCGCGAUGAGCuagacgaGUCGCuCGagccgcucgauucGCGCCg -3'
miRNA:   3'- -AGUGUGCUGUUUG-------CAGUGcGU-------------CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 82952 0.66 0.988241
Target:  5'- gUCGCcuGCGACG---GUCGcCGCcGCGCCc -3'
miRNA:   3'- -AGUG--UGCUGUuugCAGU-GCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 146512 0.66 0.988241
Target:  5'- cCGCGCGGuucCAGagcuacGCGUCGagagUGCGGCGCa -3'
miRNA:   3'- aGUGUGCU---GUU------UGCAGU----GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 112504 0.66 0.988241
Target:  5'- cCGCAgGACAAG-GUCgACGCcGCGUa -3'
miRNA:   3'- aGUGUgCUGUUUgCAG-UGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 52935 0.66 0.988241
Target:  5'- aUUGCAUGGCc-GCGcC-CGCGGCGCa -3'
miRNA:   3'- -AGUGUGCUGuuUGCaGuGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 98641 0.66 0.988241
Target:  5'- gUCACuuCGACccGGACGUCAgacgaacggUGuCGGCGCUa -3'
miRNA:   3'- -AGUGu-GCUG--UUUGCAGU---------GC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 109804 0.66 0.988241
Target:  5'- cCGCGCGACuaGAACGcUUACugggGCAGUGUUg -3'
miRNA:   3'- aGUGUGCUG--UUUGC-AGUG----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 73062 0.66 0.988241
Target:  5'- gCACAUgGACGGAUGgccCGCGCGGCa-- -3'
miRNA:   3'- aGUGUG-CUGUUUGCa--GUGCGUCGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.