Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24386 | 3' | -58 | NC_005264.1 | + | 25634 | 0.66 | 0.849112 |
Target: 5'- gCGGuggGGCcGCGCuCCGCGUUuuccucaaucgGCACGUCu -3' miRNA: 3'- -GCCu--UCGaCGCG-GGUGCGG-----------UGUGUAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 125540 | 0.66 | 0.841163 |
Target: 5'- gCGGGuguuGCUGCGgCUGCGgCGCAUAa- -3' miRNA: 3'- -GCCUu---CGACGCgGGUGCgGUGUGUag -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 121862 | 0.66 | 0.841163 |
Target: 5'- gCGGAgggccGGUcGCGCUCGCGCCGuCGCc-- -3' miRNA: 3'- -GCCU-----UCGaCGCGGGUGCGGU-GUGuag -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 2836 | 0.66 | 0.841163 |
Target: 5'- gCGGAgggccGGUcGCGCUCGCGCCGuCGCc-- -3' miRNA: 3'- -GCCU-----UCGaCGCGGGUGCGGU-GUGuag -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 36657 | 0.66 | 0.841163 |
Target: 5'- uCGGuAAGCcaaccUGCGgCUGCGCCAUAC-UCu -3' miRNA: 3'- -GCC-UUCG-----ACGCgGGUGCGGUGUGuAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 59799 | 0.66 | 0.840357 |
Target: 5'- aGGggGCgcguaGCGCaCCaugcuugccgguaGCGCCGCACc-- -3' miRNA: 3'- gCCuuCGa----CGCG-GG-------------UGCGGUGUGuag -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 115960 | 0.66 | 0.83793 |
Target: 5'- aGGAGGUacgcgGCGCCCgacagggacgcugaACGCCAggccgugUGCGUCg -3' miRNA: 3'- gCCUUCGa----CGCGGG--------------UGCGGU-------GUGUAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 75099 | 0.66 | 0.836303 |
Target: 5'- gCGGcAGGCgccgGCGCCgagcuggggcgcaguCAaaugGCCGCGCGUCa -3' miRNA: 3'- -GCC-UUCGa---CGCGG---------------GUg---CGGUGUGUAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 162583 | 0.66 | 0.833027 |
Target: 5'- uGGGcuucuGCcGCGUCCAgcgcCGCCGCACAa- -3' miRNA: 3'- gCCUu----CGaCGCGGGU----GCGGUGUGUag -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 32746 | 0.66 | 0.833027 |
Target: 5'- aGGggGCggcaccCGCCUACGUCACuu-UCg -3' miRNA: 3'- gCCuuCGac----GCGGGUGCGGUGuguAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 151772 | 0.66 | 0.833027 |
Target: 5'- aGGggGCggcaccCGCCUACGUCACuu-UCg -3' miRNA: 3'- gCCuuCGac----GCGGGUGCGGUGuguAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 139170 | 0.66 | 0.833027 |
Target: 5'- aGGAgAGCauagaagGCGCCCAuacCGCCAUGCcgGUCc -3' miRNA: 3'- gCCU-UCGa------CGCGGGU---GCGGUGUG--UAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 29289 | 0.66 | 0.832203 |
Target: 5'- gCGGgcGC-GUGCCUcgacguuuucuuuGCGCCAUGCAUg -3' miRNA: 3'- -GCCuuCGaCGCGGG-------------UGCGGUGUGUAg -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 6639 | 0.66 | 0.828059 |
Target: 5'- uGGAc-CUGCGCCCcgacauauagccggcGcCGCCACGCcgCa -3' miRNA: 3'- gCCUucGACGCGGG---------------U-GCGGUGUGuaG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 55273 | 0.66 | 0.824712 |
Target: 5'- --aGAGCUgggGCGCgCUAgGCCGCACGUUa -3' miRNA: 3'- gccUUCGA---CGCG-GGUgCGGUGUGUAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 52929 | 0.66 | 0.824712 |
Target: 5'- aGGGgcauugcauGGCcGCGCCCGCGgCGCAUu-- -3' miRNA: 3'- gCCU---------UCGaCGCGGGUGCgGUGUGuag -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 85626 | 0.66 | 0.824712 |
Target: 5'- aGGAAGC-GCGCCgA-GCCACuugguUAUCu -3' miRNA: 3'- gCCUUCGaCGCGGgUgCGGUGu----GUAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 142865 | 0.66 | 0.824712 |
Target: 5'- uCGGuuuGUUGCGUcgacUCGCGCCGCGCcuuUCu -3' miRNA: 3'- -GCCuu-CGACGCG----GGUGCGGUGUGu--AG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 59020 | 0.66 | 0.823871 |
Target: 5'- gCGGAGGCagGCGCgUCAgGucggucuCCGCGCAUCc -3' miRNA: 3'- -GCCUUCGa-CGCG-GGUgC-------GGUGUGUAG- -5' |
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24386 | 3' | -58 | NC_005264.1 | + | 67361 | 0.66 | 0.822184 |
Target: 5'- gCGGAAaacGUaGCGCCCGCGCUcgcugcgcccgccgGCGCGg- -3' miRNA: 3'- -GCCUU---CGaCGCGGGUGCGG--------------UGUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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