miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 3' -63.8 NC_005264.1 + 60072 0.65 0.609865
Target:  5'- gCCACCGaacuggccCGCCCCuagccuacugccgGCGGCCCaCAaCGCc -3'
miRNA:   3'- -GGUGGC--------GCGGGG-------------UGCCGGGaGUcGUG- -5'
24404 3' -63.8 NC_005264.1 + 153221 0.65 0.609865
Target:  5'- -gAUCGCGUacagCCACGuuacggaGCCUUCGGCGCa -3'
miRNA:   3'- ggUGGCGCGg---GGUGC-------CGGGAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 58752 0.66 0.605041
Target:  5'- gCCGCUGCGCUaucagaggcgcacgCGCGGUggUCGGCGCa -3'
miRNA:   3'- -GGUGGCGCGGg-------------GUGCCGggAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 33444 0.66 0.605041
Target:  5'- aCCcCCGCGCUgacuauuaauucccgCCACGGUCUUUuccccGCGCa -3'
miRNA:   3'- -GGuGGCGCGG---------------GGUGCCGGGAGu----CGUG- -5'
24404 3' -63.8 NC_005264.1 + 126865 0.66 0.601185
Target:  5'- cUCuCCGCGCCCCcuccagGCGaaucGCCaucgUCGGCGCg -3'
miRNA:   3'- -GGuGGCGCGGGG------UGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 31834 0.66 0.601185
Target:  5'- uCUGCCGUGCCgCgCGCGGCaagacaUgGGCGCg -3'
miRNA:   3'- -GGUGGCGCGG-G-GUGCCGgg----AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 61233 0.66 0.601185
Target:  5'- uCCACguuggcgauggCGCGCUCCagcucACGGCgcgCCUCGGCGu -3'
miRNA:   3'- -GGUG-----------GCGCGGGG-----UGCCG---GGAGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 150860 0.66 0.601185
Target:  5'- uCUGCCGUGCCgCgCGCGGCaagacaUgGGCGCg -3'
miRNA:   3'- -GGUGGCGCGG-G-GUGCCGgg----AgUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 75323 0.66 0.601185
Target:  5'- uCUGCCGCGCgCCAgugcCGGUaa-CAGCGCg -3'
miRNA:   3'- -GGUGGCGCGgGGU----GCCGggaGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 28317 0.66 0.601185
Target:  5'- -uGCCGCGCgCCUACGucuaGUCgguaUCGGCACg -3'
miRNA:   3'- ggUGGCGCG-GGGUGC----CGGg---AGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 144568 0.66 0.599258
Target:  5'- cCCGCUaGCGCUgUACGGCCCgugucgcccaugCGGUAa -3'
miRNA:   3'- -GGUGG-CGCGGgGUGCCGGGa-----------GUCGUg -5'
24404 3' -63.8 NC_005264.1 + 148343 0.66 0.591561
Target:  5'- -gACCGUGCCCCG-GGCCggggagcuCUUGGUGCu -3'
miRNA:   3'- ggUGGCGCGGGGUgCCGG--------GAGUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 141638 0.66 0.591561
Target:  5'- aCCGCCGUauugaGUCuaCUACGGCCggcCAGCACg -3'
miRNA:   3'- -GGUGGCG-----CGG--GGUGCCGGga-GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 38517 0.66 0.591561
Target:  5'- gUCGCC-CGCCCCACGGg--UCAGC-Cg -3'
miRNA:   3'- -GGUGGcGCGGGGUGCCgggAGUCGuG- -5'
24404 3' -63.8 NC_005264.1 + 107476 0.66 0.591561
Target:  5'- aCCGCCGacgcgGCCCggcUAUGGCCaaaauacaCAGCACa -3'
miRNA:   3'- -GGUGGCg----CGGG---GUGCCGGga------GUCGUG- -5'
24404 3' -63.8 NC_005264.1 + 78643 0.66 0.591561
Target:  5'- aCCGCCGCG----GCGGCCCUguGCc- -3'
miRNA:   3'- -GGUGGCGCggggUGCCGGGAguCGug -5'
24404 3' -63.8 NC_005264.1 + 157437 0.66 0.591561
Target:  5'- -uGCCGCguacGCCCUGCuGGCCCcUGGCAa -3'
miRNA:   3'- ggUGGCG----CGGGGUG-CCGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 38410 0.66 0.591561
Target:  5'- -uGCCGCguacGCCCUGCuGGCCCcUGGCAa -3'
miRNA:   3'- ggUGGCG----CGGGGUG-CCGGGaGUCGUg -5'
24404 3' -63.8 NC_005264.1 + 157544 0.66 0.591561
Target:  5'- gUCGCC-CGCCCCACGGg--UCAGC-Cg -3'
miRNA:   3'- -GGUGGcGCGGGGUGCCgggAGUCGuG- -5'
24404 3' -63.8 NC_005264.1 + 34166 0.66 0.591561
Target:  5'- gUACCGCGCCCUGCaGUCa-CAGCuGCu -3'
miRNA:   3'- gGUGGCGCGGGGUGcCGGgaGUCG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.