miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 152975 0.66 0.691919
Target:  5'- gCGCGCcgGGaCCGCGC-CC-GAUAgGGg -3'
miRNA:   3'- -GCGCGa-CC-GGCGCGaGGuCUGUgCCg -5'
24452 3' -62.1 NC_005264.1 + 123287 0.66 0.691919
Target:  5'- cCG-GCUuGCCGCGCgggaaCCGcGGgGCGGCg -3'
miRNA:   3'- -GCgCGAcCGGCGCGa----GGU-CUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 56818 0.66 0.691919
Target:  5'- uGCGCUGcGCgGCgGCcCUAGcuaGCGGCu -3'
miRNA:   3'- gCGCGAC-CGgCG-CGaGGUCug-UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 75410 0.66 0.691919
Target:  5'- uGCGC-GGCCGCGggCaguG-UACGGCg -3'
miRNA:   3'- gCGCGaCCGGCGCgaGgu-CuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 84647 0.66 0.691919
Target:  5'- uGcCGCU--CCGCGCauccggcuuUCCGGGCACaGGCg -3'
miRNA:   3'- gC-GCGAccGGCGCG---------AGGUCUGUG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 57448 0.66 0.691919
Target:  5'- uCGCGCUGgucaauGCCGUGauccgccuguuUUCCuGGCGgCGGCg -3'
miRNA:   3'- -GCGCGAC------CGGCGC-----------GAGGuCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 107653 0.66 0.691919
Target:  5'- aCGCgGCUGuaauaguuGCCGUuCUCgUAGACGCGGUu -3'
miRNA:   3'- -GCG-CGAC--------CGGCGcGAG-GUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 96094 0.66 0.691919
Target:  5'- uGCGgcuaCUGuuGCCGCGgUUUAGGCGcCGGCg -3'
miRNA:   3'- gCGC----GAC--CGGCGCgAGGUCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 4260 0.66 0.691919
Target:  5'- cCG-GCUuGCCGCGCgggaaCCGcGGgGCGGCg -3'
miRNA:   3'- -GCgCGAcCGGCGCGa----GGU-CUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 33948 0.66 0.691919
Target:  5'- gCGCGCcgGGaCCGCGC-CC-GAUAgGGg -3'
miRNA:   3'- -GCGCGa-CC-GGCGCGaGGuCUGUgCCg -5'
24452 3' -62.1 NC_005264.1 + 51420 0.66 0.688066
Target:  5'- aCGCGCaugguuuccggcaGGCCGCcCUCCAcGACcuuguUGGCg -3'
miRNA:   3'- -GCGCGa------------CCGGCGcGAGGU-CUGu----GCCG- -5'
24452 3' -62.1 NC_005264.1 + 24172 0.66 0.682273
Target:  5'- gGCuGCUgcGGCCGCGgUCgGuaaagucuGGCGCGGUg -3'
miRNA:   3'- gCG-CGA--CCGGCGCgAGgU--------CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 60895 0.66 0.682273
Target:  5'- aCGcCGCgguggGGCCGaCGCcgCCAGuuuCGCGcGCc -3'
miRNA:   3'- -GC-GCGa----CCGGC-GCGa-GGUCu--GUGC-CG- -5'
24452 3' -62.1 NC_005264.1 + 91402 0.66 0.682273
Target:  5'- aGUgGUUGGCCcuaGCGC-CgGGGCAcCGGCg -3'
miRNA:   3'- gCG-CGACCGG---CGCGaGgUCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 109400 0.66 0.682273
Target:  5'- gGCGUUGG-CGCucuuuaGgUCC-GACACGGCc -3'
miRNA:   3'- gCGCGACCgGCG------CgAGGuCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 72084 0.66 0.682273
Target:  5'- aCGUGCUGGUCGCGgUCgua--AUGGCc -3'
miRNA:   3'- -GCGCGACCGGCGCgAGgucugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 26655 0.66 0.682273
Target:  5'- gGCGCcgGcGCCGCGCUagaacGACAaaaaaGGCg -3'
miRNA:   3'- gCGCGa-C-CGGCGCGAggu--CUGUg----CCG- -5'
24452 3' -62.1 NC_005264.1 + 29938 0.66 0.682273
Target:  5'- aCGCGCUGcGCCuaGCcggucaaccgaUCCuaGGAuCGCGGUa -3'
miRNA:   3'- -GCGCGAC-CGGcgCG-----------AGG--UCU-GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 137442 0.66 0.682273
Target:  5'- gGC-CUGGCgGUGCUCCuGACGgaaacCGuGCu -3'
miRNA:   3'- gCGcGACCGgCGCGAGGuCUGU-----GC-CG- -5'
24452 3' -62.1 NC_005264.1 + 90720 0.66 0.672589
Target:  5'- cCG-GCaGGCgGCGCUCCcucaaacgagAGAUacGCGGCc -3'
miRNA:   3'- -GCgCGaCCGgCGCGAGG----------UCUG--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.