miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 150192 0.66 0.974305
Target:  5'- cGGCCUUAauagccacauUGGCGGCcuc-GCGGUa -3'
miRNA:   3'- cCCGGAGUau--------ACCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 1583 0.66 0.974305
Target:  5'- aGGGaCCUCucgGUGG-GGCAaUGGUGGa -3'
miRNA:   3'- -CCC-GGAGua-UACCgUCGUaAUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 96732 0.66 0.974305
Target:  5'- gGGGUCUCAgac-GCGGCugauccuucgUAGCGuGCa -3'
miRNA:   3'- -CCCGGAGUauacCGUCGua--------AUCGC-CG- -5'
24452 5' -53.3 NC_005264.1 + 1667 0.66 0.974305
Target:  5'- uGGGCgaCGguggGGCaaAGUAUUggGGCGGCc -3'
miRNA:   3'- -CCCGgaGUaua-CCG--UCGUAA--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 155123 0.66 0.974305
Target:  5'- uGGCC----AUGcGCAGCGUUAGggaGGCg -3'
miRNA:   3'- cCCGGaguaUAC-CGUCGUAAUCg--CCG- -5'
24452 5' -53.3 NC_005264.1 + 116794 0.66 0.971529
Target:  5'- uGGCUUCcgGgGGagAGCAUU-GCGGCu -3'
miRNA:   3'- cCCGGAGuaUaCCg-UCGUAAuCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 60835 0.66 0.971529
Target:  5'- -cGCUUCAgcuUGGCGucggcgucggcGCGUgcGCGGCa -3'
miRNA:   3'- ccCGGAGUau-ACCGU-----------CGUAauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 82359 0.66 0.971529
Target:  5'- cGGCCU----UGGCGGCGa-AGCGGa -3'
miRNA:   3'- cCCGGAguauACCGUCGUaaUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 7080 0.66 0.971529
Target:  5'- gGGGaacaC-CAggaAUGGUAGCA--GGCGGCc -3'
miRNA:   3'- -CCCg---GaGUa--UACCGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 146415 0.66 0.968542
Target:  5'- aGGCCcCGc--GGCAGUcg-AGCGGCc -3'
miRNA:   3'- cCCGGaGUauaCCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 10220 0.66 0.968542
Target:  5'- cGGCCUCGc-UGGCcucgGGCucaaUAGCGGg -3'
miRNA:   3'- cCCGGAGUauACCG----UCGua--AUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 116528 0.66 0.968542
Target:  5'- cGGUCUUcgGUGGgGuCGUUGGgGGCu -3'
miRNA:   3'- cCCGGAGuaUACCgUcGUAAUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 92085 0.66 0.968542
Target:  5'- gGGGCgggUCAUGgaGGC-GCAUUucgucgcugcGGCGGCa -3'
miRNA:   3'- -CCCGg--AGUAUa-CCGuCGUAA----------UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 2503 0.66 0.967919
Target:  5'- cGGGCCUCGcgcgacuuCAGCGcgGGgGGCg -3'
miRNA:   3'- -CCCGGAGUauacc---GUCGUaaUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 121530 0.66 0.967919
Target:  5'- cGGGCCUCGcgcgacuuCAGCGcgGGgGGCg -3'
miRNA:   3'- -CCCGGAGUauacc---GUCGUaaUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 131648 0.66 0.966647
Target:  5'- -cGCCUCGgucuGCGGUgcccgccgccagaccGUUGGCGGCa -3'
miRNA:   3'- ccCGGAGUauacCGUCG---------------UAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 8071 0.66 0.96534
Target:  5'- cGGCCgcaGUcgGGCA-CG--GGCGGCg -3'
miRNA:   3'- cCCGGag-UAuaCCGUcGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 116409 0.66 0.96534
Target:  5'- aGGCCgacgucgagcgCAg--GGCGGCGUgcagccucGCGGCg -3'
miRNA:   3'- cCCGGa----------GUauaCCGUCGUAau------CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 127098 0.66 0.96534
Target:  5'- cGGCCgcaGUcgGGCA-CG--GGCGGCg -3'
miRNA:   3'- cCCGGag-UAuaCCGUcGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 86158 0.66 0.96534
Target:  5'- uGGGCgaCAgccugGUGGCcguggaAGCAUUggAGCGGa -3'
miRNA:   3'- -CCCGgaGUa----UACCG------UCGUAA--UCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.