miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 117520 0.66 0.815612
Target:  5'- cGCGuCUGCGGuc-GCuccccuaaUCCUGGCGUCUCg -3'
miRNA:   3'- -UGU-GGCGUCuuuCG--------AGGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 159374 0.66 0.815612
Target:  5'- cACAUCGUGGAugcGGCaCCgGGCGCCa- -3'
miRNA:   3'- -UGUGGCGUCUu--UCGaGGaCCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 95424 0.66 0.815612
Target:  5'- -aGCCGCAGuuuGCUCUgcGGuUGCCCg -3'
miRNA:   3'- ugUGGCGUCuuuCGAGGa-CC-GCGGGg -5'
24454 3' -58.9 NC_005264.1 + 45393 0.66 0.81476
Target:  5'- gGCGCgGCaaacgauGGAGGGCggcgcCCUGcGCGCCgCg -3'
miRNA:   3'- -UGUGgCG-------UCUUUCGa----GGAC-CGCGGgG- -5'
24454 3' -58.9 NC_005264.1 + 32015 0.66 0.810474
Target:  5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 151042 0.66 0.810474
Target:  5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 156901 0.66 0.807018
Target:  5'- aACGCCGCGGGuucGGGC-CgUGguuagauaGCGCCUCg -3'
miRNA:   3'- -UGUGGCGUCU---UUCGaGgAC--------CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 2389 0.66 0.807018
Target:  5'- cGC-CCGCAG-GAGC-CC-GGCGCCggCCu -3'
miRNA:   3'- -UGuGGCGUCuUUCGaGGaCCGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 74614 0.66 0.807018
Target:  5'- uCugCGUAG-AAGCgaUCUUGGCGCgCUa -3'
miRNA:   3'- uGugGCGUCuUUCG--AGGACCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 104040 0.66 0.807018
Target:  5'- cGCGCCGCGGAAaucGGUuugccgacaUCCUcuGCGCCgaCCa -3'
miRNA:   3'- -UGUGGCGUCUU---UCG---------AGGAc-CGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 121416 0.66 0.807018
Target:  5'- cGC-CCGCAG-GAGC-CC-GGCGCCggCCu -3'
miRNA:   3'- -UGuGGCGUCuUUCGaGGaCCGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 78644 0.66 0.807018
Target:  5'- cCGCCGCGGc-GGC-CCU-GUGCCUCg -3'
miRNA:   3'- uGUGGCGUCuuUCGaGGAcCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 45665 0.66 0.798272
Target:  5'- gGCGCCaagcGCAGuGAAGCaCgUGGCGCgauCCCg -3'
miRNA:   3'- -UGUGG----CGUC-UUUCGaGgACCGCG---GGG- -5'
24454 3' -58.9 NC_005264.1 + 54260 0.66 0.798272
Target:  5'- aGCGCCGCAGGGAGCgCUU--CGCCa- -3'
miRNA:   3'- -UGUGGCGUCUUUCGaGGAccGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 161850 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 77737 0.66 0.798272
Target:  5'- gACugCGCAG-AAGCUgaCUacGGCGCCg- -3'
miRNA:   3'- -UGugGCGUCuUUCGAg-GA--CCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 129536 0.66 0.798272
Target:  5'- cCACUGCGGGcguGGGCUUa-GGCGUCgCCg -3'
miRNA:   3'- uGUGGCGUCU---UUCGAGgaCCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 42824 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 158335 0.66 0.798272
Target:  5'- gGCA-CGCGGAacacAAGCggCCgcaccGCGCCCCu -3'
miRNA:   3'- -UGUgGCGUCU----UUCGa-GGac---CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 148916 0.66 0.797389
Target:  5'- uGCugCgGCAGcuuuGcCUCCUGgacguucGCGCCCCg -3'
miRNA:   3'- -UGugG-CGUCuuu-C-GAGGAC-------CGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.