miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 5' -55.2 NC_005264.1 + 26360 0.66 0.9466
Target:  5'- uGGCGUUC-CgGCCGuAugACGagaggaGUCGCg -3'
miRNA:   3'- -UCGCGAGuGaCGGC-UugUGUg-----CAGCG- -5'
24466 5' -55.2 NC_005264.1 + 153339 0.66 0.9466
Target:  5'- gGGCGC-CGC-GCCuGACGCugGcugacUCGCu -3'
miRNA:   3'- -UCGCGaGUGaCGGcUUGUGugC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 156297 0.66 0.9466
Target:  5'- aGGCGCUC-CUGCCGAA-GCccccUGcCGCc -3'
miRNA:   3'- -UCGCGAGuGACGGCUUgUGu---GCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 75104 0.66 0.9466
Target:  5'- aGGCGCcgGC-GCCGAGCugGgG-CGCa -3'
miRNA:   3'- -UCGCGagUGaCGGCUUGugUgCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 37270 0.66 0.9466
Target:  5'- aGGCGCUC-CUGCCGAA-GCccccUGcCGCc -3'
miRNA:   3'- -UCGCGAGuGACGGCUUgUGu---GCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 34312 0.66 0.9466
Target:  5'- gGGCGC-CGC-GCCuGACGCugGcugacUCGCu -3'
miRNA:   3'- -UCGCGaGUGaCGGcUUGUGugC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 109964 0.66 0.942136
Target:  5'- cAGCcccCUCGCUcGCgCGugUGCACGUCGUa -3'
miRNA:   3'- -UCGc--GAGUGA-CG-GCuuGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 40679 0.66 0.942136
Target:  5'- uGGCGCcguUCGgcGUCGAGCACGCGUauaGUu -3'
miRNA:   3'- -UCGCG---AGUgaCGGCUUGUGUGCAg--CG- -5'
24466 5' -55.2 NC_005264.1 + 108524 0.66 0.942136
Target:  5'- uGCGC-CACcaCCGuGGCACacuGCGUCGCa -3'
miRNA:   3'- uCGCGaGUGacGGC-UUGUG---UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 112760 0.66 0.942136
Target:  5'- --aGCUCcCUGCCGAcgGCACGg-GCa -3'
miRNA:   3'- ucgCGAGuGACGGCUugUGUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 104137 0.66 0.942136
Target:  5'- cGCGCUgGCUGacCCGAACcgaauagaaaACGCGU-GCc -3'
miRNA:   3'- uCGCGAgUGAC--GGCUUG----------UGUGCAgCG- -5'
24466 5' -55.2 NC_005264.1 + 69651 0.66 0.942136
Target:  5'- cGaCGCUUucuagGUCGGGCACGCGgCGCu -3'
miRNA:   3'- uC-GCGAGuga--CGGCUUGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 86843 0.66 0.942136
Target:  5'- cGUGCUCAC-GCCGAuUAUGCGgagGCu -3'
miRNA:   3'- uCGCGAGUGaCGGCUuGUGUGCag-CG- -5'
24466 5' -55.2 NC_005264.1 + 83724 0.66 0.942136
Target:  5'- aAGCGCaCGCcgccgUGCCGAGCuuaaGCGUCu- -3'
miRNA:   3'- -UCGCGaGUG-----ACGGCUUGug--UGCAGcg -5'
24466 5' -55.2 NC_005264.1 + 112252 0.66 0.942136
Target:  5'- cAGCGCcggGCUGCUcAGCGcCGCGUgCGCu -3'
miRNA:   3'- -UCGCGag-UGACGGcUUGU-GUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 130857 0.66 0.937438
Target:  5'- uGGCGCUguagCGCgcaUCGGACACGCGgcccgUCGCc -3'
miRNA:   3'- -UCGCGA----GUGac-GGCUUGUGUGC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 11357 0.66 0.937438
Target:  5'- uGCGCUaucCUGUCGuucuugcggaagAACGCggccGCGUCGCg -3'
miRNA:   3'- uCGCGAgu-GACGGC------------UUGUG----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 90062 0.66 0.937438
Target:  5'- gAGCGCg--UUGauGAACAC-CGUCGCu -3'
miRNA:   3'- -UCGCGaguGACggCUUGUGuGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 797 0.66 0.937438
Target:  5'- uAGCGCUCcaguACgGCUGggUGCGCGgccgGCu -3'
miRNA:   3'- -UCGCGAG----UGaCGGCuuGUGUGCag--CG- -5'
24466 5' -55.2 NC_005264.1 + 88978 0.66 0.937438
Target:  5'- cGGUgaGCUCAgUGaCCGGgaACACAgaauuccaguuCGUCGCg -3'
miRNA:   3'- -UCG--CGAGUgAC-GGCU--UGUGU-----------GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.