miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24521 3' -57.7 NC_005264.1 + 147354 0.66 0.890605
Target:  5'- -gGCCAggcCCAUGCCCG-CcGCGAuCGCc -3'
miRNA:   3'- cgUGGUa--GGUGCGGGUaGcCGCU-GCG- -5'
24521 3' -57.7 NC_005264.1 + 41303 0.66 0.890605
Target:  5'- uCGCCccCCGCGCUgaaGUCGcGCGAgGCc -3'
miRNA:   3'- cGUGGuaGGUGCGGg--UAGC-CGCUgCG- -5'
24521 3' -57.7 NC_005264.1 + 97515 0.66 0.890605
Target:  5'- -uGCCAggagcugCCGCGgCUGU-GGCGugGCa -3'
miRNA:   3'- cgUGGUa------GGUGCgGGUAgCCGCugCG- -5'
24521 3' -57.7 NC_005264.1 + 40198 0.66 0.890605
Target:  5'- cGCGCCcgCCcucGCGgccCCCcgCGGCGGuaauucuuCGCg -3'
miRNA:   3'- -CGUGGuaGG---UGC---GGGuaGCCGCU--------GCG- -5'
24521 3' -57.7 NC_005264.1 + 63728 0.66 0.890605
Target:  5'- gGCGuCUAUCCACGCCaccagaCGGCuaauauACGCc -3'
miRNA:   3'- -CGU-GGUAGGUGCGGgua---GCCGc-----UGCG- -5'
24521 3' -57.7 NC_005264.1 + 160330 0.66 0.890605
Target:  5'- uCGCCccCCGCGCUgaaGUCGcGCGAgGCc -3'
miRNA:   3'- cGUGGuaGGUGCGGg--UAGC-CGCUgCG- -5'
24521 3' -57.7 NC_005264.1 + 159225 0.66 0.890605
Target:  5'- cGCGCCcgCCcucGCGgccCCCcgCGGCGGuaauucuuCGCg -3'
miRNA:   3'- -CGUGGuaGG---UGC---GGGuaGCCGCU--------GCG- -5'
24521 3' -57.7 NC_005264.1 + 21964 0.66 0.890605
Target:  5'- -gGCCAgcugucauuUCCugGCa-GUCGGCcuGGCGCa -3'
miRNA:   3'- cgUGGU---------AGGugCGggUAGCCG--CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 85562 0.66 0.890605
Target:  5'- cGCACCcaauucguUCCAgGCCCAaggccguaUCGGauAUGCu -3'
miRNA:   3'- -CGUGGu-------AGGUgCGGGU--------AGCCgcUGCG- -5'
24521 3' -57.7 NC_005264.1 + 148230 0.66 0.883937
Target:  5'- -uGCCGUCgugucucgauuaCGCGUUCG-CGGCGGCGUu -3'
miRNA:   3'- cgUGGUAG------------GUGCGGGUaGCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 102546 0.66 0.883937
Target:  5'- cGCGCCcgaAUCCgaguacgucAUGCCCGaCG-CGGCGCu -3'
miRNA:   3'- -CGUGG---UAGG---------UGCGGGUaGCcGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 86144 0.66 0.883937
Target:  5'- uGCGCCGcgcUCCGCGCCaagcUgGGCaGAgGUa -3'
miRNA:   3'- -CGUGGU---AGGUGCGGgu--AgCCG-CUgCG- -5'
24521 3' -57.7 NC_005264.1 + 10579 0.66 0.883937
Target:  5'- aGCAaaAUCCugGCCaaGUCcGCGACcGCg -3'
miRNA:   3'- -CGUggUAGGugCGGg-UAGcCGCUG-CG- -5'
24521 3' -57.7 NC_005264.1 + 161215 0.66 0.883937
Target:  5'- gGCAggUUGgagCCGCGCCCAcCGGCGuccCGUa -3'
miRNA:   3'- -CGU--GGUa--GGUGCGGGUaGCCGCu--GCG- -5'
24521 3' -57.7 NC_005264.1 + 65613 0.66 0.883937
Target:  5'- uGCugCGUUCGCgGCUCGUgGGUacccGCGCg -3'
miRNA:   3'- -CGugGUAGGUG-CGGGUAgCCGc---UGCG- -5'
24521 3' -57.7 NC_005264.1 + 42188 0.66 0.883937
Target:  5'- gGCAggUUGgagCCGCGCCCAcCGGCGuccCGUa -3'
miRNA:   3'- -CGU--GGUa--GGUGCGGGUaGCCGCu--GCG- -5'
24521 3' -57.7 NC_005264.1 + 2849 0.66 0.883258
Target:  5'- cGCGCUcgcgCCGuCGCCCGcugCGGCugcgaucgaccggGGCGCg -3'
miRNA:   3'- -CGUGGua--GGU-GCGGGUa--GCCG-------------CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 121875 0.66 0.883258
Target:  5'- cGCGCUcgcgCCGuCGCCCGcugCGGCugcgaucgaccggGGCGCg -3'
miRNA:   3'- -CGUGGua--GGU-GCGGGUa--GCCG-------------CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 105712 0.66 0.882577
Target:  5'- aGCcuaCGUCCGCGCCCAgguuuuuccuuaCGcGCGAaGCa -3'
miRNA:   3'- -CGug-GUAGGUGCGGGUa-----------GC-CGCUgCG- -5'
24521 3' -57.7 NC_005264.1 + 18405 0.66 0.881895
Target:  5'- cCACCGUUCcggccggcgcaggcGCGCCCucUCGcuCGGCGCg -3'
miRNA:   3'- cGUGGUAGG--------------UGCGGGu-AGCc-GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.