Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24527 | 3' | -60.8 | NC_005264.1 | + | 120307 | 0.66 | 0.747387 |
Target: 5'- cGCGCGgaagcugCGCCCaCGCCaCacaucaggccacaguGCUACAGAa -3' miRNA: 3'- -UGCGCa------GCGGGcGCGGaG---------------CGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 39733 | 0.66 | 0.743655 |
Target: 5'- cGCGaCGcCGCCCGUgcaacaGCCcCGCUGuCGGGa -3' miRNA: 3'- -UGC-GCaGCGGGCG------CGGaGCGAU-GUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 114990 | 0.66 | 0.743655 |
Target: 5'- gGCGCGU-GCCgGCGC-UUGCaaaACAGAa -3' miRNA: 3'- -UGCGCAgCGGgCGCGgAGCGa--UGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 158759 | 0.66 | 0.743655 |
Target: 5'- cGCGaCGcCGCCCGUgcaacaGCCcCGCUGuCGGGa -3' miRNA: 3'- -UGC-GCaGCGGGCG------CGGaGCGAU-GUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 90964 | 0.66 | 0.743655 |
Target: 5'- uGCGuCGggCGCCCGCGUgcCGUcGCGGAa -3' miRNA: 3'- -UGC-GCa-GCGGGCGCGgaGCGaUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 49202 | 0.66 | 0.743655 |
Target: 5'- aGCGCucaCGCCCGCGCUaccuggaaaCGCgACAGGu -3' miRNA: 3'- -UGCGca-GCGGGCGCGGa--------GCGaUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 31571 | 0.66 | 0.734264 |
Target: 5'- gGCGCGUUacCCCGCGCa--GUUACGGc -3' miRNA: 3'- -UGCGCAGc-GGGCGCGgagCGAUGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 137305 | 0.66 | 0.734264 |
Target: 5'- aGCGCcUUGUCCGCGCCgccuuaugggCGCUugAc- -3' miRNA: 3'- -UGCGcAGCGGGCGCGGa---------GCGAugUcu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 162232 | 0.66 | 0.734264 |
Target: 5'- -aGCGaaCGCCaccguaGuCGCCUCGCUGcCGGAg -3' miRNA: 3'- ugCGCa-GCGGg-----C-GCGGAGCGAU-GUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 91007 | 0.66 | 0.734264 |
Target: 5'- aACGCGUCGUuauUCGCGaCCcCGCggGCGGc -3' miRNA: 3'- -UGCGCAGCG---GGCGC-GGaGCGa-UGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 125175 | 0.66 | 0.72479 |
Target: 5'- cCGCG-CGCCCGuCGCgcaUCGCgUGCAcGAu -3' miRNA: 3'- uGCGCaGCGGGC-GCGg--AGCG-AUGU-CU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 51925 | 0.66 | 0.72479 |
Target: 5'- cCG-GUCGUCCGCGCCgaGCUugGcGAg -3' miRNA: 3'- uGCgCAGCGGGCGCGGagCGAugU-CU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 61837 | 0.66 | 0.72479 |
Target: 5'- -gGC-UCGCCUGCGCCgCG-UACGGGu -3' miRNA: 3'- ugCGcAGCGGGCGCGGaGCgAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 6148 | 0.66 | 0.72479 |
Target: 5'- cCGCG-CGCCCGuCGCgcaUCGCgUGCAcGAu -3' miRNA: 3'- uGCGCaGCGGGC-GCGg--AGCG-AUGU-CU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 75260 | 0.66 | 0.72479 |
Target: 5'- cACGCGccguguucguccUCGUCgGCGCUUUGCUgguccgauGCGGAc -3' miRNA: 3'- -UGCGC------------AGCGGgCGCGGAGCGA--------UGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 92149 | 0.66 | 0.723838 |
Target: 5'- cGCGCuGUCGCCCGCgggcguaaaaauuGCCU-GCcgGCGGc -3' miRNA: 3'- -UGCG-CAGCGGGCG-------------CGGAgCGa-UGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 79646 | 0.66 | 0.715242 |
Target: 5'- aGCGCauaguUCGCgCCGCGCCUgcCGCUgACAa- -3' miRNA: 3'- -UGCGc----AGCG-GGCGCGGA--GCGA-UGUcu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 155520 | 0.66 | 0.715242 |
Target: 5'- gACGCGggaUCuCCCGCGgCUCGUUccCAGAg -3' miRNA: 3'- -UGCGC---AGcGGGCGCgGAGCGAu-GUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 34751 | 0.66 | 0.715242 |
Target: 5'- gGCGCGcCGgUCGcCGCUgUCGCUACAcGAa -3' miRNA: 3'- -UGCGCaGCgGGC-GCGG-AGCGAUGU-CU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 25546 | 0.66 | 0.715242 |
Target: 5'- uGC-CGUaCGCCCGCGUCgccgccaaCGCcGCGGAa -3' miRNA: 3'- -UGcGCA-GCGGGCGCGGa-------GCGaUGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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