miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24550 5' -56.5 NC_005264.1 + 70866 0.66 0.920826
Target:  5'- cCGCG-GGCGUaaaaauUGcCUGccggcggcGCCGCGGCCa -3'
miRNA:   3'- -GCGCuCCGCG------AUaGAU--------UGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 26080 0.66 0.920826
Target:  5'- aGCccGGCGCUGUUuuUGGCCAuagcuaaacUGGCCa -3'
miRNA:   3'- gCGcuCCGCGAUAG--AUUGGU---------GCCGGg -5'
24550 5' -56.5 NC_005264.1 + 157273 0.66 0.920826
Target:  5'- aGCcAGGCGCUGU----CCGCGGUgCu -3'
miRNA:   3'- gCGcUCCGCGAUAgauuGGUGCCGgG- -5'
24550 5' -56.5 NC_005264.1 + 80630 0.66 0.920826
Target:  5'- aCGCGAugcuGGCGCcgcuaccGUCUAauACgAUGGCCg -3'
miRNA:   3'- -GCGCU----CCGCGa------UAGAU--UGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 16580 0.66 0.920826
Target:  5'- gGCGGcGGCGCaca-UGACUcCGGCCg -3'
miRNA:   3'- gCGCU-CCGCGauagAUUGGuGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 135050 0.66 0.920826
Target:  5'- gCGCGcccGUGgUAUCUGACCGagaaGGCgCCa -3'
miRNA:   3'- -GCGCuc-CGCgAUAGAUUGGUg---CCG-GG- -5'
24550 5' -56.5 NC_005264.1 + 124780 0.66 0.920826
Target:  5'- aGCcAGGCGCUGU----CCGCGGUgCu -3'
miRNA:   3'- gCGcUCCGCGAUAgauuGGUGCCGgG- -5'
24550 5' -56.5 NC_005264.1 + 62954 0.66 0.920826
Target:  5'- uGCGGGGC-CUAgggCgUAGCaugGCGGCCg -3'
miRNA:   3'- gCGCUCCGcGAUa--G-AUUGg--UGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 67019 0.66 0.917477
Target:  5'- gGCGAcGGCGUccgacaagaacgcagUAaCUAuagacGCCGCuGGCCCa -3'
miRNA:   3'- gCGCU-CCGCG---------------AUaGAU-----UGGUG-CCGGG- -5'
24550 5' -56.5 NC_005264.1 + 20440 0.66 0.915199
Target:  5'- cCGCGAGGcCGCgccgC-AACCcCuGCCCa -3'
miRNA:   3'- -GCGCUCC-GCGaua-GaUUGGuGcCGGG- -5'
24550 5' -56.5 NC_005264.1 + 137315 0.66 0.915199
Target:  5'- cCGCGccgccuuauGGGCGCUugacaucCUAGaCGCGGCCa -3'
miRNA:   3'- -GCGC---------UCCGCGAua-----GAUUgGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 20724 0.66 0.915199
Target:  5'- gCGCGAGGUGCcucCUAAUCuuGcGCUCu -3'
miRNA:   3'- -GCGCUCCGCGauaGAUUGGugC-CGGG- -5'
24550 5' -56.5 NC_005264.1 + 150806 0.66 0.915199
Target:  5'- uCGCG-GGCGCUucgcCUAaggGCgGCGGUCg -3'
miRNA:   3'- -GCGCuCCGCGAua--GAU---UGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 66201 0.66 0.915199
Target:  5'- gGCG-GGCGgUG-CgccuCCGCGGCCa -3'
miRNA:   3'- gCGCuCCGCgAUaGauu-GGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 55832 0.66 0.915199
Target:  5'- gGUGGcGGCGCgg-CUGA-CugGGCCUc -3'
miRNA:   3'- gCGCU-CCGCGauaGAUUgGugCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 156598 0.66 0.915199
Target:  5'- cCGCGAcggaGGCGgcaaGUCUcGCgGCGGCCg -3'
miRNA:   3'- -GCGCU----CCGCga--UAGAuUGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 131246 0.66 0.915199
Target:  5'- uCGCG-GGCGCUucgcCUAaggGCgGCGGUCg -3'
miRNA:   3'- -GCGCuCCGCGAua--GAU---UGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 64964 0.66 0.915199
Target:  5'- gGCGcuGCGCgcagAUCguuUCGCGGCCa -3'
miRNA:   3'- gCGCucCGCGa---UAGauuGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 29056 0.66 0.915199
Target:  5'- uCGCGGuGGCGUUcgCcg--CGCGGUCCa -3'
miRNA:   3'- -GCGCU-CCGCGAuaGauugGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 125455 0.66 0.915199
Target:  5'- cCGCGAcggaGGCGgcaaGUCUcGCgGCGGCCg -3'
miRNA:   3'- -GCGCU----CCGCga--UAGAuUGgUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.