miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 107463 0.66 0.92905
Target:  5'- uCUAUUU-GCGUAgACCGCCGACg-CGg -3'
miRNA:   3'- -GAUAGAcCGCGUgUGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 81445 0.66 0.92905
Target:  5'- -----cGGCGCGCACCcGCaugcAUCUCGg -3'
miRNA:   3'- gauagaCCGCGUGUGG-CGgu--UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 57502 0.66 0.92905
Target:  5'- ---gCUGGCGCGCGCgGCggcgaGAgCUCa -3'
miRNA:   3'- gauaGACCGCGUGUGgCGg----UUgGAGc -5'
24600 5' -55.9 NC_005264.1 + 65300 0.66 0.928528
Target:  5'- aUGUCUGGCucuuGCcCGCUGCCAcgccacaGCCgCGg -3'
miRNA:   3'- gAUAGACCG----CGuGUGGCGGU-------UGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 29898 0.66 0.923724
Target:  5'- ----aUGGCgGCGaaacgcccUACUGCCAGCCUCa -3'
miRNA:   3'- gauagACCG-CGU--------GUGGCGGUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 139183 0.66 0.923724
Target:  5'- -----aGGCGCccAUACCGCCAugC-CGg -3'
miRNA:   3'- gauagaCCGCG--UGUGGCGGUugGaGC- -5'
24600 5' -55.9 NC_005264.1 + 45571 0.66 0.923724
Target:  5'- gUGUC-GGCGCGCACgaGUC--CCUCGg -3'
miRNA:   3'- gAUAGaCCGCGUGUGg-CGGuuGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 56319 0.66 0.923724
Target:  5'- -----cGGcCGCGCuGCCGCCGucgcgcaccGCCUCGu -3'
miRNA:   3'- gauagaCC-GCGUG-UGGCGGU---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 129961 0.66 0.923724
Target:  5'- -aGUCUGG-GCGC-CUGCCuccaagguucACCUCGa -3'
miRNA:   3'- gaUAGACCgCGUGuGGCGGu---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 17847 0.66 0.923724
Target:  5'- -cAUCUcGCGCGCGCUGuUCGACCgCGu -3'
miRNA:   3'- gaUAGAcCGCGUGUGGC-GGUUGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 73708 0.66 0.923724
Target:  5'- ---cCUGGCGCcagUACCGaCGGCCUUGc -3'
miRNA:   3'- gauaGACCGCGu--GUGGCgGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 130772 0.66 0.920414
Target:  5'- gCUAg-UGGC-CACGCUGCCcgacuauccaagaggAGCCUCGa -3'
miRNA:   3'- -GAUagACCGcGUGUGGCGG---------------UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 56411 0.66 0.91816
Target:  5'- aUAUC-GaGCGCgGCGCCGUCgAGCUUCGg -3'
miRNA:   3'- gAUAGaC-CGCG-UGUGGCGG-UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 71774 0.66 0.91816
Target:  5'- cCUG-CUGGCGC-CGuuGCagaagcGCCUCGg -3'
miRNA:   3'- -GAUaGACCGCGuGUggCGgu----UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 12201 0.66 0.91816
Target:  5'- -gGUCgcagGGCgauGCGCGCCGCCucGCCa-- -3'
miRNA:   3'- gaUAGa---CCG---CGUGUGGCGGu-UGGagc -5'
24600 5' -55.9 NC_005264.1 + 132763 0.66 0.91816
Target:  5'- uCUGUCcgGGCGCgGCGgCGCCGACg--- -3'
miRNA:   3'- -GAUAGa-CCGCG-UGUgGCGGUUGgagc -5'
24600 5' -55.9 NC_005264.1 + 131228 0.66 0.91816
Target:  5'- -gGUCgcagGGCgauGCGCGCCGCCucGCCa-- -3'
miRNA:   3'- gaUAGa---CCG---CGUGUGGCGGu-UGGagc -5'
24600 5' -55.9 NC_005264.1 + 128482 0.66 0.91759
Target:  5'- ---cCUGGguggggucucgaaCGUACuCUGCCGACCUCGc -3'
miRNA:   3'- gauaGACC-------------GCGUGuGGCGGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 60727 0.66 0.91759
Target:  5'- ---cCUGGCGCAUguggaugguagagGCCGCCuguuacaucGugCUCGu -3'
miRNA:   3'- gauaGACCGCGUG-------------UGGCGG---------UugGAGC- -5'
24600 5' -55.9 NC_005264.1 + 9455 0.66 0.91759
Target:  5'- ---cCUGGguggggucucgaaCGUACuCUGCCGACCUCGc -3'
miRNA:   3'- gauaGACC-------------GCGUGuGGCGGUUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.