miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 27685 0.66 0.72571
Target:  5'- cGGcuGGCCuCuGCCuc-GCCGACGCuCGCu -3'
miRNA:   3'- -CCu-UCGG-GcCGGuucCGGCUGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 141471 0.66 0.72571
Target:  5'- cGggGCCucuuuccacCGGCCGAGGC-GGC-CCGg -3'
miRNA:   3'- cCuuCGG---------GCCGGUUCCGgCUGcGGCg -5'
24612 3' -61.6 NC_005264.1 + 120719 0.66 0.72571
Target:  5'- cGGcGGUCgGGCgGAGgacgguGCCGGCGaCUGCg -3'
miRNA:   3'- -CCuUCGGgCCGgUUC------CGGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 85034 0.66 0.72571
Target:  5'- ---cGUCCGcGCCGucaauGCCGucuGCGCCGCg -3'
miRNA:   3'- ccuuCGGGC-CGGUuc---CGGC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 67471 0.66 0.72571
Target:  5'- ---cGCCUGGCaguuuGGCgGcacGCGCCGCc -3'
miRNA:   3'- ccuuCGGGCCGguu--CCGgC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 1150 0.66 0.72571
Target:  5'- cGGGAcGaUCCGGCCGccAGucuGCCGGCG-CGCg -3'
miRNA:   3'- -CCUU-C-GGGCCGGU--UC---CGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 73045 0.66 0.72571
Target:  5'- cGGaAAGCgCCGGCgGuaugcGGCCagaGACGUgGCg -3'
miRNA:   3'- -CC-UUCG-GGCCGgUu----CCGG---CUGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 50491 0.66 0.72571
Target:  5'- aGGAcguggccacGGCCgCGGCCAGuucugccuuGGUCGaugucucuGCGCUGCc -3'
miRNA:   3'- -CCU---------UCGG-GCCGGUU---------CCGGC--------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 65169 0.66 0.72571
Target:  5'- cGgcGCCCucucuGGCCAuGGCCGcggccuuuuCGCCGa -3'
miRNA:   3'- cCuuCGGG-----CCGGUuCCGGCu--------GCGGCg -5'
24612 3' -61.6 NC_005264.1 + 120177 0.66 0.72571
Target:  5'- cGGGAcGaUCCGGCCGccAGucuGCCGGCG-CGCg -3'
miRNA:   3'- -CCUU-C-GGGCCGGU--UC---CGGCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 47726 0.66 0.72571
Target:  5'- aGGAuAGUCUaGCCAGGGCC-ACuuCCGCg -3'
miRNA:   3'- -CCU-UCGGGcCGGUUCCGGcUGc-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 63647 0.66 0.72571
Target:  5'- cGGAGGCCUG--CGAGGaccccaCGucuACGCCGCg -3'
miRNA:   3'- -CCUUCGGGCcgGUUCCg-----GC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 118920 0.66 0.72571
Target:  5'- --uGGCCCucgacGUCGAGG-CGACGgCCGCg -3'
miRNA:   3'- ccuUCGGGc----CGGUUCCgGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 58012 0.66 0.72477
Target:  5'- --cGGcCCCGGCgGacAGGCCGucgugcgGCGcCCGCu -3'
miRNA:   3'- ccuUC-GGGCCGgU--UCCGGC-------UGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 131484 0.66 0.72006
Target:  5'- -aAGGCCCGGC--AGGCgucagcgaguucuugCGugGCCGg -3'
miRNA:   3'- ccUUCGGGCCGguUCCG---------------GCugCGGCg -5'
24612 3' -61.6 NC_005264.1 + 12457 0.66 0.72006
Target:  5'- -aAGGCCCGGC--AGGCgucagcgaguucuugCGugGCCGg -3'
miRNA:   3'- ccUUCGGGCCGguUCCG---------------GCugCGGCg -5'
24612 3' -61.6 NC_005264.1 + 11773 0.66 0.716279
Target:  5'- cGGgcGCCUGGCUcgcacuccGGGGCagcccgaGGCGguuCCGCa -3'
miRNA:   3'- -CCuuCGGGCCGG--------UUCCGg------CUGC---GGCG- -5'
24612 3' -61.6 NC_005264.1 + 130799 0.66 0.716279
Target:  5'- cGGgcGCCUGGCUcgcacuccGGGGCagcccgaGGCGguuCCGCa -3'
miRNA:   3'- -CCuuCGGGCCGG--------UUCCGg------CUGC---GGCG- -5'
24612 3' -61.6 NC_005264.1 + 3687 0.66 0.716279
Target:  5'- cGggGCCUGGCgcggaAAGGgCGcacaguacuUGCCGCg -3'
miRNA:   3'- cCuuCGGGCCGg----UUCCgGCu--------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 45386 0.66 0.716279
Target:  5'- aGGAgaaGGCgCGGCaaacgaugGAGGgCGGCGCCcuGCg -3'
miRNA:   3'- -CCU---UCGgGCCGg-------UUCCgGCUGCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.