Results 1 - 20 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 84952 | 0.66 | 0.748568 |
Target: 5'- gCGcCGGGUGcuCGCuUGCgGCCAGGCu -3' miRNA: 3'- gGCuGCCCGCc-GCGcACGgCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 55829 | 0.66 | 0.748568 |
Target: 5'- gCCGgu-GGCGGCGCG-GCUGaCUggGCc -3' miRNA: 3'- -GGCugcCCGCCGCGCaCGGC-GGuuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 73369 | 0.66 | 0.748568 |
Target: 5'- aCGcGCGGuGCuuuuGGCGCGgcuCUGCCAAGCc -3' miRNA: 3'- gGC-UGCC-CG----CCGCGCac-GGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 17018 | 0.66 | 0.748568 |
Target: 5'- aCGGCaaaGGCGGCGaucGUCGCCAGcaGCg -3' miRNA: 3'- gGCUGc--CCGCCGCgcaCGGCGGUU--UG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 95634 | 0.66 | 0.747647 |
Target: 5'- cCCGACGGuucccacuauagGCGcCGCGUcauagcgcugcagGCCGCCAu-- -3' miRNA: 3'- -GGCUGCC------------CGCcGCGCA-------------CGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 72495 | 0.66 | 0.745801 |
Target: 5'- gUCGGCGGGuugaagaucugcgcCgagaGGCGCGUGgCGCUuuGCa -3' miRNA: 3'- -GGCUGCCC--------------G----CCGCGCACgGCGGuuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 158118 | 0.66 | 0.739312 |
Target: 5'- cUCGGCGGGCaGCgGCGUcuggaccagcuGCUGUCGugGACg -3' miRNA: 3'- -GGCUGCCCGcCG-CGCA-----------CGGCGGU--UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 9741 | 0.66 | 0.739312 |
Target: 5'- uCUGACucGGCGGCagGCaaGCCGCCGuGCu -3' miRNA: 3'- -GGCUGc-CCGCCG--CGcaCGGCGGUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 58016 | 0.66 | 0.739312 |
Target: 5'- cCCGGCGGacaggccgucguGCGGCGCccGCuCGUCucGCg -3' miRNA: 3'- -GGCUGCC------------CGCCGCGcaCG-GCGGuuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 130094 | 0.66 | 0.739312 |
Target: 5'- gUGACGua-GGCGgGUGCCGCCc--- -3' miRNA: 3'- gGCUGCccgCCGCgCACGGCGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 39091 | 0.66 | 0.739312 |
Target: 5'- cUCGGCGGGCaGCgGCGUcuggaccagcuGCUGUCGugGACg -3' miRNA: 3'- -GGCUGCCCGcCG-CGCA-----------CGGCGGU--UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 156429 | 0.66 | 0.739312 |
Target: 5'- gCGGCuGGCGGCG-GUGaUCGCCucGAUa -3' miRNA: 3'- gGCUGcCCGCCGCgCAC-GGCGGu-UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 93864 | 0.66 | 0.739312 |
Target: 5'- gCGGCGGGUaGU-CGUGCCGUggCAGGCc -3' miRNA: 3'- gGCUGCCCGcCGcGCACGGCG--GUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 82262 | 0.66 | 0.739312 |
Target: 5'- gCGACaGGCGGCaccggagcGCGaaggGuCCGCCGAGa -3' miRNA: 3'- gGCUGcCCGCCG--------CGCa---C-GGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 54913 | 0.66 | 0.739312 |
Target: 5'- gCGAaGGucGCGGCGC-UGCUGgCGAACg -3' miRNA: 3'- gGCUgCC--CGCCGCGcACGGCgGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 11067 | 0.66 | 0.739312 |
Target: 5'- gUGACGua-GGCGgGUGCCGCCc--- -3' miRNA: 3'- gGCUGCccgCCGCgCACGGCGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 104922 | 0.66 | 0.739312 |
Target: 5'- -aGACaaGGCGGCGgaacccccagcCGUGCCaagcGCCGAGCc -3' miRNA: 3'- ggCUGc-CCGCCGC-----------GCACGG----CGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 162815 | 0.66 | 0.738382 |
Target: 5'- gCCGugGGuGCGGgGCGcaguuucUGUCGCgAuauAGCg -3' miRNA: 3'- -GGCugCC-CGCCgCGC-------ACGGCGgU---UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 43789 | 0.66 | 0.738382 |
Target: 5'- gCCGugGGuGCGGgGCGcaguuucUGUCGCgAuauAGCg -3' miRNA: 3'- -GGCugCC-CGCCgCGC-------ACGGCGgU---UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 155895 | 0.66 | 0.729972 |
Target: 5'- gUGACGGuGCGGCGCGacGUauuaGCUcaAGACa -3' miRNA: 3'- gGCUGCC-CGCCGCGCa-CGg---CGG--UUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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