Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24673 | 3' | -56.2 | NC_005264.1 | + | 13319 | 0.66 | 0.914341 |
Target: 5'- -----aCGGCCg-CGCGGAGcaggaggagagGGGCGCg -3' miRNA: 3'- guuagaGCCGGagGCGCCUU-----------UCCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 3689 | 0.66 | 0.914341 |
Target: 5'- ------gGGCCUggCGCGGAAAgGGCGCa -3' miRNA: 3'- guuagagCCGGAg-GCGCCUUU-CCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 132346 | 0.66 | 0.914341 |
Target: 5'- -----aCGGCCg-CGCGGAGcaggaggagagGGGCGCg -3' miRNA: 3'- guuagaGCCGGagGCGCCUU-----------UCCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 124094 | 0.66 | 0.914341 |
Target: 5'- gGGUCgcaaggCGGCCagcccgUCCGgGGAGGGGUc- -3' miRNA: 3'- gUUAGa-----GCCGG------AGGCgCCUUUCCGug -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 5067 | 0.66 | 0.914341 |
Target: 5'- gGGUCgcaaggCGGCCagcccgUCCGgGGAGGGGUc- -3' miRNA: 3'- gUUAGa-----GCCGG------AGGCgCCUUUCCGug -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 84203 | 0.66 | 0.914341 |
Target: 5'- ---aCagGGCCgCCGCGGcgguuaacagaAGAGGCGCc -3' miRNA: 3'- guuaGagCCGGaGGCGCC-----------UUUCCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 160421 | 0.66 | 0.913165 |
Target: 5'- -uGUCcgCGGCCUCCGCuuucuuccuAGGCAg -3' miRNA: 3'- guUAGa-GCCGGAGGCGccuu-----UCCGUg -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 41394 | 0.66 | 0.913165 |
Target: 5'- -uGUCcgCGGCCUCCGCuuucuuccuAGGCAg -3' miRNA: 3'- guUAGa-GCCGGAGGCGccuu-----UCCGUg -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 68438 | 0.66 | 0.908367 |
Target: 5'- gCAGUCcgcgccgCGGUCUgCGCGcGGAGGGCc- -3' miRNA: 3'- -GUUAGa------GCCGGAgGCGC-CUUUCCGug -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 124299 | 0.66 | 0.908367 |
Target: 5'- gAGUCgCGGCCggaCgGCGGGgcGGCGg -3' miRNA: 3'- gUUAGaGCCGGa--GgCGCCUuuCCGUg -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 20257 | 0.66 | 0.908367 |
Target: 5'- gGGUUgcggcgCGGCCU-CGCGGAGGGG-ACc -3' miRNA: 3'- gUUAGa-----GCCGGAgGCGCCUUUCCgUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 5272 | 0.66 | 0.908367 |
Target: 5'- gAGUCgCGGCCggaCgGCGGGgcGGCGg -3' miRNA: 3'- gUUAGaGCCGGa--GgCGCCUuuCCGUg -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 64526 | 0.66 | 0.902157 |
Target: 5'- -uGUC-CGcGCCgCCGCGGAGGGGgGu -3' miRNA: 3'- guUAGaGC-CGGaGGCGCCUUUCCgUg -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 132635 | 0.66 | 0.902157 |
Target: 5'- gCGAUCgCGGUCgggaCGCGGgcAGGgGCg -3' miRNA: 3'- -GUUAGaGCCGGag--GCGCCuuUCCgUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 18562 | 0.66 | 0.902157 |
Target: 5'- uCAGUCggagCGGCaUCCGCcGGcccAAGGCAg -3' miRNA: 3'- -GUUAGa---GCCGgAGGCG-CCu--UUCCGUg -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 98305 | 0.66 | 0.902157 |
Target: 5'- -uAUCgCGGaaccccCCUCCGCGGc--GGCGCg -3' miRNA: 3'- guUAGaGCC------GGAGGCGCCuuuCCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 13608 | 0.66 | 0.902157 |
Target: 5'- gCGAUCgCGGUCgggaCGCGGgcAGGgGCg -3' miRNA: 3'- -GUUAGaGCCGGag--GCGCCuuUCCgUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 16490 | 0.66 | 0.902157 |
Target: 5'- -----gUGGCCUgCGgGGucGAGGCACg -3' miRNA: 3'- guuagaGCCGGAgGCgCCu-UUCCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 40227 | 0.66 | 0.895714 |
Target: 5'- gUAAUUcuUCGcGCCUCCuggcguuacGCGGAGGaaguGGCACg -3' miRNA: 3'- -GUUAG--AGC-CGGAGG---------CGCCUUU----CCGUG- -5' |
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24673 | 3' | -56.2 | NC_005264.1 | + | 159254 | 0.66 | 0.895714 |
Target: 5'- gUAAUUcuUCGcGCCUCCuggcguuacGCGGAGGaaguGGCACg -3' miRNA: 3'- -GUUAG--AGC-CGGAGG---------CGCCUUU----CCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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