miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 74338 0.66 0.997544
Target:  5'- uCGGUGAucuCAGAGGcgAUGAAGUCCg -3'
miRNA:   3'- -GCCACUccuGUCUUUugUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 46144 0.66 0.997544
Target:  5'- uGGUcAGGuuAGAAGACGCGuguuuGUCCc -3'
miRNA:   3'- gCCAcUCCugUCUUUUGUGCuu---CGGG- -5'
24675 5' -50.6 NC_005264.1 + 147229 0.66 0.997544
Target:  5'- aGGUGGGcACgAGAGAuauGC-CGGAGCCg -3'
miRNA:   3'- gCCACUCcUG-UCUUU---UGuGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 9560 0.66 0.997092
Target:  5'- cCGGUGGcGGcuaGCAGGuaaaACGucGCCCg -3'
miRNA:   3'- -GCCACU-CC---UGUCUuuugUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 50830 0.66 0.997092
Target:  5'- uGGcgGAGGACccu-AACugGGuuacGGCCCa -3'
miRNA:   3'- gCCa-CUCCUGucuuUUGugCU----UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 13798 0.66 0.997092
Target:  5'- aCGGUGAacccGGGCAGggGGCugugggacgugGCGucuaacauAGCCa -3'
miRNA:   3'- -GCCACU----CCUGUCuuUUG-----------UGCu-------UCGGg -5'
24675 5' -50.6 NC_005264.1 + 77768 0.66 0.997092
Target:  5'- aCGGUGcggcGGACcuGGGGAACGgGGcaGGCCUu -3'
miRNA:   3'- -GCCACu---CCUG--UCUUUUGUgCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 132370 0.66 0.996573
Target:  5'- gGGgcgcGAGGAUgaacgucgGGGccGAGC-CGggGCCCg -3'
miRNA:   3'- gCCa---CUCCUG--------UCU--UUUGuGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 92555 0.66 0.996573
Target:  5'- gGaGUGGGGgaaguuGCGGGAcucGAC-CGAGGCCUg -3'
miRNA:   3'- gC-CACUCC------UGUCUU---UUGuGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 13343 0.66 0.996573
Target:  5'- gGGgcgcGAGGAUgaacgucgGGGccGAGC-CGggGCCCg -3'
miRNA:   3'- gCCa---CUCCUG--------UCU--UUUGuGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 150801 0.66 0.996573
Target:  5'- gCGuGUG-GGGCAGGAGcGCAgCGAcuGCCCc -3'
miRNA:   3'- -GC-CACuCCUGUCUUU-UGU-GCUu-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 86154 0.66 0.996518
Target:  5'- aCGGUGGGcGACAGccugguggccgugGAAGCAuUGGAGCg- -3'
miRNA:   3'- -GCCACUC-CUGUC-------------UUUUGU-GCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 64833 0.66 0.995981
Target:  5'- aCGGUuuccGAGaACuGGuccagGAACACGAAGUCCg -3'
miRNA:   3'- -GCCA----CUCcUGuCU-----UUUGUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 22542 0.66 0.995981
Target:  5'- gGGcGGGGAaagauaCAGAAAcCGCGAguAGCCUc -3'
miRNA:   3'- gCCaCUCCU------GUCUUUuGUGCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 115948 0.66 0.995307
Target:  5'- gCGGcGcAGGcUAGGAGguACGCGgcGCCCg -3'
miRNA:   3'- -GCCaC-UCCuGUCUUU--UGUGCuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 149459 0.66 0.995307
Target:  5'- gCGGagGAGGucuCGGggGAgcCGCG-GGCCCc -3'
miRNA:   3'- -GCCa-CUCCu--GUCuuUU--GUGCuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 159996 0.66 0.995307
Target:  5'- ---cGGGcGACGGcgcGAGCGCGAccGGCCCu -3'
miRNA:   3'- gccaCUC-CUGUCu--UUUGUGCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 104053 0.66 0.995307
Target:  5'- uCGGccucagGGGGGCGGucGACgauuACGGcgAGCCCa -3'
miRNA:   3'- -GCCa-----CUCCUGUCuuUUG----UGCU--UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 44911 0.66 0.995307
Target:  5'- gCGG-GAGGAgAGAuccggcgcaagcGAAcCGCG-GGCCCg -3'
miRNA:   3'- -GCCaCUCCUgUCU------------UUU-GUGCuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 30432 0.66 0.995307
Target:  5'- gCGGagGAGGucuCGGggGAgcCGCG-GGCCCc -3'
miRNA:   3'- -GCCa-CUCCu--GUCuuUU--GUGCuUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.