miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 93842 0.66 0.989912
Target:  5'- gGUugGcCGUGCGCGcAAUAauGCGGCGg -3'
miRNA:   3'- aCGugC-GCGCGCGCuUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 113976 0.66 0.989912
Target:  5'- gGCAC-CG-GCGaGAGAUGGAgCAGCGg -3'
miRNA:   3'- aCGUGcGCgCGCgCUUUAUCU-GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 59703 0.66 0.989912
Target:  5'- uUGCGcCGCGCGCcGCGcc---GGCGGCu -3'
miRNA:   3'- -ACGU-GCGCGCG-CGCuuuauCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 13954 0.66 0.989912
Target:  5'- aUGcCACGCG-GCGaCGAGG-AGACgAGCGa -3'
miRNA:   3'- -AC-GUGCGCgCGC-GCUUUaUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 68614 0.66 0.989912
Target:  5'- gGcCGCGUaGCGCaucguagcaacGCGugGUAGGCGACGa -3'
miRNA:   3'- aC-GUGCG-CGCG-----------CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 84166 0.66 0.989912
Target:  5'- aGCGCGCGCGC-CGGAccuGuuuacuucuGCGGCGu -3'
miRNA:   3'- aCGUGCGCGCGcGCUUuauC---------UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121532 0.66 0.989912
Target:  5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3'
miRNA:   3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 2505 0.66 0.989912
Target:  5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3'
miRNA:   3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 45341 0.66 0.989912
Target:  5'- cGCGC-CGCGCcCGAGAcgAGGCGAa- -3'
miRNA:   3'- aCGUGcGCGCGcGCUUUa-UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 64487 0.66 0.988525
Target:  5'- gGCAaGCGCGC-CGAGAgagucgccUGGACcGCGc -3'
miRNA:   3'- aCGUgCGCGCGcGCUUU--------AUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 37857 0.66 0.988525
Target:  5'- aGCGCGuCGCGaCGCGc---AGACAAa- -3'
miRNA:   3'- aCGUGC-GCGC-GCGCuuuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 34468 0.66 0.988525
Target:  5'- cGCACuauuuGCGCGCGCuuca-GGAgGACGu -3'
miRNA:   3'- aCGUG-----CGCGCGCGcuuuaUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 15762 0.66 0.988525
Target:  5'- gUGCGCGCGaGCGUGGcuccGGGCGAg- -3'
miRNA:   3'- -ACGUGCGCgCGCGCUuua-UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 37565 0.66 0.988525
Target:  5'- aGCGCGcCGC-CGCGGA--GGGCGAa- -3'
miRNA:   3'- aCGUGC-GCGcGCGCUUuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 134805 0.66 0.988525
Target:  5'- gGCGuCGCGCGCGcCGGA--AGACc--- -3'
miRNA:   3'- aCGU-GCGCGCGC-GCUUuaUCUGuugc -5'
24729 3' -52.1 NC_005264.1 + 126554 0.66 0.988525
Target:  5'- gGCucuuCGCGC-CGCGA---AGACGugGu -3'
miRNA:   3'- aCGu---GCGCGcGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 14548 0.66 0.988525
Target:  5'- cGCACGCGCGCGgucuccaGAAucucccgccGGGCAAa- -3'
miRNA:   3'- aCGUGCGCGCGCg------CUUua-------UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 19003 0.66 0.987625
Target:  5'- aUGgGCGUacccaaacaagauaaGCGgGCGuGAUGGACGGCa -3'
miRNA:   3'- -ACgUGCG---------------CGCgCGCuUUAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 45682 0.66 0.986995
Target:  5'- aGCACGUG-GCGCGAucccgggGGAaaaCAACa -3'
miRNA:   3'- aCGUGCGCgCGCGCUuua----UCU---GUUGc -5'
24729 3' -52.1 NC_005264.1 + 58633 0.66 0.986995
Target:  5'- gUGCgACGCGUGCucugcgGCGAGGUcGACcACa -3'
miRNA:   3'- -ACG-UGCGCGCG------CGCUUUAuCUGuUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.