miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 12894 0.66 0.968789
Target:  5'- aCgGACCGuCGaGCCGCC-CGGCCUc--- -3'
miRNA:   3'- -GgUUGGU-GC-CGGCGGcGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 112522 0.66 0.968789
Target:  5'- gCCGcguACuCGCGGCUccagGCCGUAACCg---- -3'
miRNA:   3'- -GGU---UG-GUGCCGG----CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49162 0.66 0.968789
Target:  5'- cCCcACaGCGGCCGCgGCAAgUUUcGGa -3'
miRNA:   3'- -GGuUGgUGCCGGCGgCGUUgGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 4904 0.66 0.968789
Target:  5'- -aGGCCACgcuGGCCGCCGUc-CCUa--- -3'
miRNA:   3'- ggUUGGUG---CCGGCGGCGuuGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 156410 0.66 0.968789
Target:  5'- gCCAGCgAC-GCCGCCGCGAg------ -3'
miRNA:   3'- -GGUUGgUGcCGGCGGCGUUggaauuc -5'
24731 5' -54.2 NC_005264.1 + 115813 0.66 0.968789
Target:  5'- -gGACCGCGGgagGCCGCGuuccACCgUGAGg -3'
miRNA:   3'- ggUUGGUGCCgg-CGGCGU----UGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 37383 0.66 0.968789
Target:  5'- gCCAGCgAC-GCCGCCGCGAg------ -3'
miRNA:   3'- -GGUUGgUGcCGGCGGCGUUggaauuc -5'
24731 5' -54.2 NC_005264.1 + 2714 0.66 0.968789
Target:  5'- uCCAGaua-GGCCGCCcGCGGCCg---- -3'
miRNA:   3'- -GGUUggugCCGGCGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 138545 0.66 0.968789
Target:  5'- gUAGCCACagaGGCCGCCGUGuucgcgaacauGCUcUGGGa -3'
miRNA:   3'- gGUUGGUG---CCGGCGGCGU-----------UGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 131920 0.66 0.968789
Target:  5'- aCgGACCGuCGaGCCGCC-CGGCCUc--- -3'
miRNA:   3'- -GgUUGGU-GC-CGGCGGcGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 75223 0.66 0.968486
Target:  5'- aUCGGCCcugcgcgGCGGCCGUcuuguauaaCGCGACCa---- -3'
miRNA:   3'- -GGUUGG-------UGCCGGCG---------GCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 43908 0.66 0.965665
Target:  5'- aCGAUagCGCGGCCGUCGCcucGACgUcGAGg -3'
miRNA:   3'- gGUUG--GUGCCGGCGGCG---UUGgAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 18044 0.66 0.965665
Target:  5'- gCCGACgcgaaGCGGCggCGCCGCgAGCCa---- -3'
miRNA:   3'- -GGUUGg----UGCCG--GCGGCG-UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 155676 0.66 0.965665
Target:  5'- cCCGACCcgugcgggAUGGaCCugGCCGCGACCa---- -3'
miRNA:   3'- -GGUUGG--------UGCC-GG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 59779 0.66 0.965665
Target:  5'- gCCGuggcuguCCACGGCCguguccGCCGCGgaGCCg---- -3'
miRNA:   3'- -GGUu------GGUGCCGG------CGGCGU--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 61601 0.66 0.965665
Target:  5'- gCCGGCCACGGuCUGCacaaaCGCGugCa---- -3'
miRNA:   3'- -GGUUGGUGCC-GGCG-----GCGUugGaauuc -5'
24731 5' -54.2 NC_005264.1 + 90287 0.66 0.965665
Target:  5'- aUAGuuGCGGuuGaCCGCGugCUUGAa -3'
miRNA:   3'- gGUUggUGCCggC-GGCGUugGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 69847 0.66 0.965665
Target:  5'- cCCcGCUACGGCCgguGCUGCGGCg----- -3'
miRNA:   3'- -GGuUGGUGCCGG---CGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 61916 0.66 0.965665
Target:  5'- -aGGCgCACGGgCGCCGCcGCUUgcgcgAAGa -3'
miRNA:   3'- ggUUG-GUGCCgGCGGCGuUGGAa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 59974 0.66 0.965665
Target:  5'- cUCAGCCacgcgGCGGUgGCCGCGAgCg---- -3'
miRNA:   3'- -GGUUGG-----UGCCGgCGGCGUUgGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.