miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 5' -55.7 NC_005264.1 + 99863 0.66 0.952165
Target:  5'- gUCCGCCaaagccgcGGugGCGGGGAaGUCUGacccCGAa -3'
miRNA:   3'- -GGGCGG--------CCugUGUCUCUgCAGAU----GCU- -5'
24734 5' -55.7 NC_005264.1 + 105689 0.66 0.952165
Target:  5'- uCCCGCCGG-CGCAaAGACagaccaGcCUACGu -3'
miRNA:   3'- -GGGCGGCCuGUGUcUCUG------CaGAUGCu -5'
24734 5' -55.7 NC_005264.1 + 114756 0.66 0.952165
Target:  5'- aCCCGCgCGGcCGCGGuauuGCG-CUAUGAa -3'
miRNA:   3'- -GGGCG-GCCuGUGUCuc--UGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 95334 0.66 0.952165
Target:  5'- gCCGCCGGGCGCcgcgaaacGGAcucGGCGgg-GCGGc -3'
miRNA:   3'- gGGCGGCCUGUG--------UCU---CUGCagaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 63709 0.66 0.952165
Target:  5'- uCCCGUgCGaGAaccCAGAGGCGUCUAUc- -3'
miRNA:   3'- -GGGCG-GC-CUgu-GUCUCUGCAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 125634 0.66 0.950967
Target:  5'- gCCgGUCGGGagucCAUGGAGcggcgccguaaaauGCGUCUGCGGc -3'
miRNA:   3'- -GGgCGGCCU----GUGUCUC--------------UGCAGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 127232 0.66 0.948091
Target:  5'- cCCCGg-GGACACGGAGACGcggccaUCggcCGAa -3'
miRNA:   3'- -GGGCggCCUGUGUCUCUGC------AGau-GCU- -5'
24734 5' -55.7 NC_005264.1 + 139953 0.66 0.948091
Target:  5'- aCCC-UCGGGCccugccCGGAGAUG-CUGCGAa -3'
miRNA:   3'- -GGGcGGCCUGu-----GUCUCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 8205 0.66 0.948091
Target:  5'- cCCCGg-GGACACGGAGACGcggccaUCggcCGAa -3'
miRNA:   3'- -GGGCggCCUGUGUCUCUGC------AGau-GCU- -5'
24734 5' -55.7 NC_005264.1 + 84250 0.66 0.948091
Target:  5'- aCCGCgUGGACACGcGcuGCGUugCUGCGAc -3'
miRNA:   3'- gGGCG-GCCUGUGU-CucUGCA--GAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 101357 0.66 0.948091
Target:  5'- aCCGCgGGGCGCGucGGCGcgCUagaACGAa -3'
miRNA:   3'- gGGCGgCCUGUGUcuCUGCa-GA---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 129767 0.66 0.948091
Target:  5'- aUCCGCCccGGGCACcGcGACGUCgcaGAu -3'
miRNA:   3'- -GGGCGG--CCUGUGuCuCUGCAGaugCU- -5'
24734 5' -55.7 NC_005264.1 + 9146 0.66 0.943794
Target:  5'- aCCGCC--AC-CAGAGAUGUCU-CGGa -3'
miRNA:   3'- gGGCGGccUGuGUCUCUGCAGAuGCU- -5'
24734 5' -55.7 NC_005264.1 + 126934 0.66 0.943794
Target:  5'- cCUCGCCGGAgUACuggGGGGACGUaacgCUgccGCGAg -3'
miRNA:   3'- -GGGCGGCCU-GUG---UCUCUGCA----GA---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 43052 0.66 0.943794
Target:  5'- cCCCGCCGacuguCGCGGucaAGAauuCGUCUACGc -3'
miRNA:   3'- -GGGCGGCcu---GUGUC---UCU---GCAGAUGCu -5'
24734 5' -55.7 NC_005264.1 + 7908 0.66 0.943794
Target:  5'- cCUCGCCGGAgUACuggGGGGACGUaacgCUgccGCGAg -3'
miRNA:   3'- -GGGCGGCCU-GUG---UCUCUGCA----GA---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 143468 0.66 0.93927
Target:  5'- gCCCGUgGGGCAUuGGGuGCGaCUugGAc -3'
miRNA:   3'- -GGGCGgCCUGUGuCUC-UGCaGAugCU- -5'
24734 5' -55.7 NC_005264.1 + 121122 0.66 0.93927
Target:  5'- gCCGCCuGGCGCgAGAaGAUGUagagggCUACGAg -3'
miRNA:   3'- gGGCGGcCUGUG-UCU-CUGCA------GAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 162256 0.66 0.93927
Target:  5'- gCUGCCGGAguCGggcGAGuCGUCUugGu -3'
miRNA:   3'- gGGCGGCCUguGU---CUCuGCAGAugCu -5'
24734 5' -55.7 NC_005264.1 + 120196 0.66 0.937869
Target:  5'- gUCUGCCGGcgcgcgauggggguACGCAGcggaccGGGCGUCcGCGGc -3'
miRNA:   3'- -GGGCGGCC--------------UGUGUC------UCUGCAGaUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.